Pseudomonas lundensis: AA042_03530
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Entry
AA042_03530 CDS
T05473
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
plq
Pseudomonas lundensis
Pathway
plq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA042_03530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plq03019
]
AA042_03530
03009 Ribosome biogenesis [BR:
plq03009
]
AA042_03530
Enzymes [BR:
plq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AA042_03530
Messenger RNA biogenesis [BR:
plq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AA042_03530
Ribosome biogenesis [BR:
plq03009
]
Prokaryotic type
rRNA processing factors
AA042_03530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AOZ11831
LinkDB
All DBs
Position
810459..813716
Genome browser
AA seq
1085 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARTSAPVPTEAA
AAAAPAPAPTIAEPSLFKGLVKSLVSLFASKEEPAPAPTVVEKPATERPQRNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREPREAREPREETPVVAREERQPRPPREERAPR
APREDRKPRGEREERVRELREPLDAAPAITPEQERPARPPREERQPRPPREERAPRTEQA
TPAVEDEAALSNAEQIQDDAQDNAEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSEEG
SEEAKAENAPATTAELAAGLAVTEAVASTVISAPAEAQANQQAERATAATQESAPAETVV
AEQTKAVAIVETPAASAPVVETPVVETPVAQAPVVETPVIEATTPVETVKAPEVEVAPAQ
ETQPQIKAASEPAPVIEAPVELTAEPVAEAPAAETPVVQAPVVEKPAFEKRPEPVKEART
LREPVAEPVMIEEAPAAPQPAEPEVIAQPEPVEVIVKAEVVEVAVVAAPVASALTSNGRA
PNDPREVRRRKREAAAAAAAAQAQATEAVAEHTTPTVDENLRSVEDLVEQNPKALEEEHE
PKPLA
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacctgaagagttgcgcgtagcactggtagatggccaacgc
ctctatgacctggacatcgagtcaggtgcgcgcgagcaaaagaaagccaacatctacaaa
ggccgtattactcgcatcgaacccagccttgaggctgcctttgtcgatttcggctctgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagccccagaa
ggccgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgag
aaagaagagcgtggcaacaagggcgcagccctgaccacgttcatcagcctggccggtcgt
tatctggttctgatgccgaacaacccgcgcgctggcggcatctcgcgccgcattgaaggc
gaagagcgcaacgaactgcgtgaagcgctaaacggcctgatcgcccctgccgacatgggc
ctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccatcaaagaagcctcgctggaccgcgctgccccgttc
ctgatctaccaggaaagcaacgtcatcatccgtgccatccgcgattacctgcgccaggac
atcggtgaagttctgatcgacagcgttgaagcccaggacgaagccctgacattcattcgc
caggtgatgccgcagtacgccagcaaaatcaaactctacgaagacagcgttccgctgttc
aatcgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgttgaactgcct
tccggcggctccatcgttatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcagcgatatcgaagaaaccgccctgcaaaccaaccttgaagcg
gctgaagaaatcgctcgccagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgacccctgccaaaaaccagcgcgccgtggaagagaaagtccgcgaatgc
ctggaagcagaccgtgcccgcgtacaggtcggccgcatctcgcgcttcggcttgctggaa
atgtcccgtcagcgtctgcgtccttctctgggcgaaagcagcggcatcgtatgcccgcgc
tgcaacggcaccggcatcatccgcgacgtcgagtccctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaagaccgtactgccgaagttcgcgcccaggtaccaatcccg
gttgctgcgttcctgcttaacgaaaaacgcaactcgatcaccaagatcgaactgcggact
cgtgcacgcatcgtcattctgccgaacgaccacctcgaaacgcctcacttcgaagtgcag
cgcctgcgtgatgacagcccggaagcccacaccaatcagtccagctatgaaatcgccgcg
gctgccgctgaagtggaagaagttcagccggctgctgccacccgcaccctggttcgtcag
gaagctgccgtcaagacagccccggcccgcacctcggcgccggtcccgaccgaagctgcc
gctgccgctgcaccggctcccgcgccaaccatcgctgagccaagcctgttcaaaggcctg
gtgaagtcactggtcagcctgtttgcctccaaggaagagccagcaccggcgccgaccgtg
gttgaaaaaccggccactgaacgtccgcagcgtaacgaagagcgtcgcaacggccgccag
caaagccgcaatcgcaacggtcgccgcgacgaagagcgcaagcctcgcgaagagcgtgca
cctcgtgaagagcgcgccccgcgtgagccgcgtgaagcccgtgaacctcgtgaagagaca
ccggttgtagcacgtgaagagcgtcaacctcgtccaccccgtgaagagcgcgctccacgc
gcaccgcgtgaagaccgcaagccgcgtggcgaacgtgaagagcgcgtgcgtgaattgcgc
gaacctctggatgccgctccggccatcacccctgagcaagaacgtccggcccgcccaccc
cgtgaagagcgtcaacctcgcccgccacgtgaagaacgcgcccctcgcacagagcaagcc
acgcctgctgtcgaagacgaagccgctctgagcaacgccgaacaaatccaggatgatgcc
caggacaacgcggagggcgatcgcccacgtcgccgctcacgcggtcagcgtcgtcgcagc
aatcgtcgcgagcgccaacgtgatgccaacggcaatgtgatcgaaggctcggaagaaggc
agcgaagaagccaaagctgaaaacgcgccagccaccacagctgaactggcggccggtctg
gccgtgacagaagccgttgccagcactgtaatcagcgccccagctgaagcccaggccaat
cagcaagccgaacgggcgaccgcggcaacccaggaatcggctccggctgaaaccgtagtt
gctgagcaaaccaaggccgtggcgattgttgaaacgcccgctgcttcggcaccggttgtt
gaaacgcctgttgttgaaacaccggtagcgcaagcgccagtcgttgaaactcccgtgatt
gaagccaccacacccgtcgaaacggttaaagcgcctgaagttgaagtggctccggcccaa
gagactcagcctcagatcaaggccgcttccgagcctgcgcctgtgattgaagcacccgtc
gaactgacagcagagcctgttgcagaggccccagcggcagagacgccggttgtacaagcg
ccagtcgttgaaaagcctgcttttgaaaagcgtcctgagcccgtcaaggaagcgcgcacc
ctgcgcgaacccgttgccgagcctgtgatgattgaagaagcacccgctgcgccgcagcct
gctgaacctgaagtaatcgcccaaccagaaccggttgaagtgattgtgaaggctgaggta
gttgaagtggctgtcgttgcagcgcctgtggcaagcgccctgaccagcaacggtcgcgcc
cctaacgacccacgtgaagtgcgtcgccgcaagcgtgaagccgctgctgccgcagccgct
gctcaagcgcaagctaccgaggccgttgcagagcacacgacgccaaccgtcgacgaaaac
ctgcgttccgtcgaagacctggtcgagcaaaaccctaaagccctggaagaagaacacgag
cctaaacccctcgcctga
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