Pseudomonas luteola: FOB45_23270
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Entry
FOB45_23270 CDS
T06601
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plul
Pseudomonas luteola
Pathway
plul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOB45_23270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plul03021
]
FOB45_23270 (rpoB)
03400 DNA repair and recombination proteins [BR:
plul03400
]
FOB45_23270 (rpoB)
Enzymes [BR:
plul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOB45_23270 (rpoB)
Transcription machinery [BR:
plul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FOB45_23270 (rpoB)
DNA repair and recombination proteins [BR:
plul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FOB45_23270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QEU30522
LinkDB
All DBs
Position
1:complement(3435034..3439107)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGAGKDQLRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDSVFVRIDRRRKLPATVLLRALGYGTEEVLDMFYDTNVFHIKGET
LNLELVPQRLRGEIASFDIKDNAGKVIVEQGRRVTARHINQLEKSGITELEVPFDYVIGR
TTAKAIVHPATGEIIAECNTELTLDMLAKIAKANVVRIETLYTNDIDCGPFVSDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRDEIE
GQGILSREDIVDVLRTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNQYGFLESPYRVVK
DAVASDEIVFLSAIEEANHVIAQASAALDENNRLVDELVAVRHQNEFTVKSPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVANAEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVNKGD
VIARGDILADGPSTDMGELALGQNMRVAFMTWNGFNFEDSILLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITSDIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKSQLDE
IRKDLNEEFRIVEGATFERLRQALVGQVADGGPNVKKGSVITDEYLDGLERGQWFKLRMA
EDAQNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDETGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRSFLHELYNEIGGRQENLDELSDEEVLRLAKNLRGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMCLFDGRTGNQFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccgcac
gttatggacgtgccgtatctattggctatccagctggattcgtatcgcgaattcctgcag
gcgggcgcaggcaaagatcagctccgcgatatcggtctgcacgcggccttcaagtccgtt
ttcccgattatcagttattccggcaatgctgccttggaatatgtcggttatcgccttggc
gagccggcgttcgatgttaaagagtgtgttctgcgcggcgtgacatttgctgttccgctg
cgagtaaaagtgcgcctgattatttttgatcgtgagtcgtccaacaaggcgatcaaagac
atcaaggagcaagaagtttacatgggggaaattcccctgatgacagaaaacggcaccttc
attatcaatggtaccgagcgtgtcatcgtttcccagttgcaccgttctcctggtgtcttc
ttcgatcacgaccgtggtaagacccacagctccggtaagctgctgtattccgctcgtatt
attccttaccgtggttcttggttagacttcgagtttgaccctaaggacagcgtattcgtt
cgtatcgaccgtcgccgcaagctgcctgcgaccgttctgctgcgcgcgcttggttacggt
actgaagaagtgctggatatgttctacgacaccaacgtattccacatcaagggtgaaacc
ttgaatctggaattggtgccgcagcgtctgcgtggcgaaattgccagctttgatattaag
gacaatgcaggcaaggtgattgtagagcagggacgtcgtgttactgcgcgccatatcaat
cagcttgaaaagtcaggtattaccgagctggaagtgccattcgattatgttattggccgt
actactgccaaggcgatcgtgcatcctgctactggtgaaattattgccgagtgcaatacc
gagttaaccctcgatatgctggcaaaaattgcaaaggcaaatgtcgtccgcatcgaaacg
ttgtacaccaacgacattgactgtggtccgtttgtttccgatacgctgaagatcgattcc
acaaccaatcaactcgaagcattggttgaaatctatcgtatgatgcgtccaggcgagcct
ccaaccaaggaagctgctgagacactatttaacaacctgttcttcagcgccgagcgttac
gatctatctgccgttggccgtatgaagttcaatcgtcgtatcggccgtgacgaaatcgaa
ggccaaggtatactgagccgcgaagacatcgttgacgtgctcagaacgctggtagatatt
cggaacggtaaaggtatcgtcgatgatatcgatcacttaggtaaccgccgtgtacgttgt
gtaggtgagatggctgaaaatcagttccgtgttggcctggtgcgtgttgagcgcgcggtc
aaggaacgtctatcgatggccgaaagtgaaggactgatgccgcaagacctgatcaatgca
aagccggtggctgctgcgatcaaggagtttttcggatcgagccagttgtctcagttcatg
gaccagaacaacccgctttctgagatcacgcacaagcgtcgtgtctcagcactcggcccg
ggtggtttaacacgggagcgtgcgggctttgaggttcgtgacgttcacccgactcattac
ggtcgcgtatgtccgattgagacaccagaaggcccgaacattggtctgatcaactcgctg
gcaacctatgcacgcacgaaccagtatggtttcctagaaagtccttatcgcgtagtcaag
gatgctgtggcctctgatgagattgtgttcctgtcagcgatcgaagaagccaatcatgta
atcgctcaggcctctgcggctctggacgaaaataaccgactggtcgatgagcttgtagcg
gtacgccatcagaacgaattcacggttaagagcccggaagacgtaactctgatggatgtg
tcacccaagcaggtggtttccgttgctgcttcgctgattcctttcctcgagcacgatgat
gcgaaccgtgcccttatgggttcgaacatgcagcgtcaggctgtcccgactctgcgttcg
gacaagccgctagtcggaacaggtatggagcgtaacgtagcacgcgactctggtgtttgt
gttgtggcacgtcgaggcggtgtgatcgactccgttgacgcaagccgtatcgtggtacgc
gttgctaatgccgaagttgaaacgggcgaggcgggtgtagatatctacaacctgaccaaa
tatacccgctccaaccagaacacctgcattaaccagcgtccgctggtaaataagggtgac
gtcattgcgcgtggcgacattctggctgatggcccgtctaccgatatgggtgagctggca
ctgggtcagaatatgcgcgttgcgtttatgacctggaacggcttcaacttcgaagactcg
atcctgttgtctgagcgcgttgtgcaggaagaccgctttactacgatccacattcaggag
ttgacctgtgtggctcgtgatacaaagcttggcccagaagaaatcacttctgatatcccg
aacgtaggtgaggcagcgcttaacaagcttgatgaagccggtattgtttacgttggtgcc
gaggtacaagcaggtgacattctggtcggtaaggtaacgccgaaaggtgaaacccagctg
actccagaagaaaagctgctacgtgccatcttcggcgaaaaggcgtccgatgttaaggat
acttccctgcgggtaccaacgggtactaagggtacggtcattgatgtacaagtctttacc
cgtgatggggtagagcgtgactctcgtgcactggcaatcgagaagtcccagctcgacgag
attcgcaaagacctcaacgaggagttccgtatcgttgaaggtgccaccttcgagcgtctc
cgtcaggcacttgtaggtcaggttgcggatggcggaccgaatgtcaaaaaaggttctgtc
attactgacgaatacctggatggtctggagcgtggccagtggttcaagctgcgtatggca
gaagatgcgcaaaacgagcagttggaaaaggctcaagcctatctatccgatcgccgtcag
ctcttggacgacaagttcgaggacaagaagcgcaagctgcagcaaggcgatgacctggca
cctggcgtgcttaagatcgtgaaggtttacctggcaatccgtcgccgtatccagcctggt
gacaagatggcaggtcgtcacggtaacaagggtgtggtatcggtcatcatgccggttgaa
gacatgccttacgatgagacgggtactccggttgacatcgtattgaacccgctgggtgtt
ccgtcacggatgaacgttggtcagattcttgaaacgcacctaggccttgctgccaagggg
ttgggcgagaagatcaatcgcatgcttgaagagcaacgcaaagtagctgagctgcgtagt
ttcctgcatgagctctataacgagatcggtggccgccaggaaaacctggatgagctgagc
gacgaagaagtgttgcgtttggctaaaaacctgcgtggtggcgtgccgatggctacgccg
gtcttcgatggtgctaaggaacgtgaaatcaaggctatgctgaagctggctgatctgccc
gaaagtggtcagatgtgcctgtttgacggccgtaccggtaatcagttcgagcgtccggtt
actgtcggctacatgtatatgctgaagctcaaccacctggtcgatgacaagatgcatgcc
cgttccacaggatcgtatagcctggttactcagcagccgctgggtggtaaggcgcagttc
ggtggacagcgtttcggagagatggaggtctgggcgctggaagcttatggtgccgcctac
acccttcaggagatgctgacggtcaagtcggacgatgtgaatggccggaccaagatgtac
aagaacatcgtggacggagatcatcgtatggaggccggtatgccggagtccttcaacgta
ctgatcaaggaaattcgctcgctcggtatcgatatcgaattggaaaccgaataa
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