Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_02150
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Entry
A4R40_02150 CDS
T05478
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A4R40_02150 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plum03021
]
A4R40_02150 (rpoB)
03400 DNA repair and recombination proteins [BR:
plum03400
]
A4R40_02150 (rpoB)
Enzymes [BR:
plum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A4R40_02150 (rpoB)
Transcription machinery [BR:
plum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A4R40_02150 (rpoB)
DNA repair and recombination proteins [BR:
plum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A4R40_02150 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AWK40405
UniProt:
A0A6L9JQJ9
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All DBs
Position
464440..468468
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AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQNGLEAAFRSVFPIQ
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMNYSTEEILNLFFSKTIFEIRDNRLQMT
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDEVNRIEVPVEYIAGKVVARD
YIDVNTGEIICAANMELSLDLLARLSQSGHKSIETLFTNDLDHGAYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSREEVEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRLVRDGVVT
DEIHYLSAIEEGNFVIAQANTVLDDEGHFVEDLITCRNYGESSLFNREQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLRQAKKDL
TEELQIFEAGLFARIRSVLIAGGIEAEKLDKLPRGRWLELGLADEEKQNQLEQLAEQYDE
LKAEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQKAYNLGDETRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLK
LGDLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEGE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccgcaa
gtgttggacgtaccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagatccagaaggccagaatggtttagaagcggcattccgttctgtattcccaatccag
agctacagtggcagttcggagctgcaatacgttagctaccgtcttggtgagccagtgttt
gatgttaaagagtgccagattcgtggtgtaacttattctgcacctctgcgcgttaagctg
cgtctggttatctatgaacgtgaagcaccggaaggtacggtcaaagatatcaaagagcaa
gaagtctacatgggtgaaattccgctcatgactgacaacggtacttttgttatcaatggt
actgagcgggttattgtctcccagttgcatcgtagtcctggtgtattctttgacagcgat
aagggtaaaactcactcatccggtaaggtactgtataacgcacgtattattccttaccgt
ggttcttggttagatttcgaattcgatccaaaagataatctgtttgtgcgcattgaccgc
cgtcgtaaattgccggcaacgattattctgcgtgcaatgaattacagcactgaagagatt
ttgaacctgttcttcagtaaaacgattttcgaaattcgtgacaacagactgcaaatgacg
ctggtaccagaacgtttgcgtggtgaaaccgcttcttttgatattgaagcaaacggcaag
gtttatgttgaaaaaggccgtcgtattaccgcacgtcatatccgccagttagaaaaagat
gaagtgaaccgtattgaggttcctgttgaatacattgcgggtaaagttgttgcaagagac
tacattgatgtcaacacaggtgaaattatctgtgctgctaacatggagctctctttagat
ctgttggcacgtttgagccaatctggtcataaatctatcgaaacattgttcaccaacgat
ttagatcacggcgcatatatttccgagacacttcgtgttgatccaaccaatgaccgtttg
agtgctttggttgagatttatcgcatgatgcgtcctggtgagccaccaacccgtgaagcg
gcagaaaatctgtttgaaaatctgttcttctcagaagatcgttatgatctttctgcggtt
ggtcgtatgaaattcaaccgctcattgagccgtgaagaagtcgaaggatctggtattctg
agtaaagatgacatcattgatgtcatgaaaaaactcattgatatccgtaatggtaaaggt
gaagtcgacgatatcgaccacttaggtaaccgtcgtatccgttctgttggtgagatggca
gaaaaccagttccgtgttggtctggtacgcgttgagcgtgcagtgaaagagcgtctgtct
ctgggtgatctggatacactgatgcctcaggatatgatcaacgctaagccgatttcagcc
gcagtgaaagaattctttggttccagccagctgtctcagtttatggaccaaaacaaccca
ctttctgaaatcactcacaaacgccgtatctctgcgttgggtccaggtggtttgacccgt
gagcgtgcgggcttcgaagtgcgtgacgtacatccaacgcactatggtcgagtatgtcca
atcgaaaccccggaaggtccgaacatcggtctgattaactcattgtctgtttatgcgcag
actaacgagtatggtttccttgaaaccccatatcgtctggttcgtgatggtgttgttact
gatgaaattcactatctgtctgcgattgaagaaggtaacttcgttatcgcacaggcaaac
accgtattagatgacgaaggccacttcgttgaagatctgataacttgccgtaattatggt
gaatccagcttatttaaccgtgagcaggttgaatatatggacgtttccacccagcaggtg
gtttccgttggtgcttccttgatcccattcttggaacacgatgacgcaaaccgcgcattg
atgggtgcaaacatgcaacgtcaggctgttcctactctgcgtgctgataagccgttggtc
gggacaggtatggaacgtgcagtagccgttgactcaggtgtaacttctgttgctaaacgc
ggtggtgtggttcaatacgttgatgcatctcgtatcgttatcaaagtaaatgaagacgaa
atgtatccgggtgaagcaggtattgatatttataacctgactaaatatacccgttctaac
cagaacacctgtattaaccagatgccatgtgtctctctgggcgaaccggtggaacgtggt
gacgtactggctgatggtccatctactgacttgggtgaactggctctgggccagaacatg
cgcgtagcgttcatgccgtggaatggttataacttcgaggactccatcttagtttctgag
cgtgtcgtccaggaagatcgctttacgaccattcatatccaggaactggcttgcgtatct
cgtgataccaaattagggcctgaagagatcacggctgacatccctaacgtaggtgaggct
gcactctccaagctggatgaatccggtattgtttacatcggtgcggaagtaaccggcggt
gacattctggttggtaaagtgacacctaaaggtgaaactcagctgacgccagaagaaaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgcgta
ccaaatggcgtatccggtacggttatcgacgtacaggtatttacccgtgatggtgtagaa
aaagataaacgtgccttggaaattgaagagatgcagctgcgtcaggctaagaaggacctg
acagaagagttgcaaatctttgaagctggcctgtttgcacgtatccgttctgttttgatt
gcaggcggcatcgaagctgagaaactggataaactgcctcgtgggcgttggttggaattg
ggtctggctgatgaagagaaacagaatcagttggaacagttggctgaacagtatgacgaa
ctcaaagctgagttcgagaaaaaactggatgctaaacgccgtaagatcacacagggtgat
gatctggcaccgggtgtgctgaaaatcgtcaaagtttatctggcggttaaacgtcagatt
cagcctggtgataagatggcaggtcgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcactccggtagatatcgtactgaaccca
ctgggcgtaccatcacgtatgaacattggtcagatcttggaaacgcatctgggcatggct
gcgaaaggtattggcgacaagatcaatgcgatgctgaaacagcagcaggaagttgccaaa
ctgcgtgaatttatccagaaagcttataacctgggtgatgaaacccgtcagaaagttgat
ctgagcactttctctgatgaagaagttatgcgtttggcagaaaacctgaaaaaaggcatg
ccaattgcgacaccagtgtttgatggtgcgaaagagaaagaaataaaagagctgctgaaa
ttgggtgacttgccaacttctggtcaaattaccctgtttgatggtcgtaccggtgagcaa
tttgagcgtcaggttaccgttggctacatgtatatgctgaagctgaaccacttggtggat
gacaaaatgcacgctcgttcaacgggttcgtacagtctggttactcagcaaccgttgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcattggaagca
tatggtgccgcgtacaccttgcaggaaatgctcaccgtcaagtccgacgatgttaacggc
cgtaccaagatgtataaaaacatcgtggatggcaaccaccagatggagccaggtatgccg
gaatccttcaacgtattgttgaaagagatccgctctctgggtatcaacatcgagctggaa
ggcgaataa
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