Planococcus sp. MB-3u-03: CW734_01770
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Entry
CW734_01770 CDS
T05387
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
plx
Planococcus sp. MB-3u-03
Pathway
plx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CW734_01770 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plx03021
]
CW734_01770 (rpoB)
03400 DNA repair and recombination proteins [BR:
plx03400
]
CW734_01770 (rpoB)
Enzymes [BR:
plx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CW734_01770 (rpoB)
Transcription machinery [BR:
plx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CW734_01770 (rpoB)
DNA repair and recombination proteins [BR:
plx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CW734_01770 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AUD12602
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All DBs
Position
116130..119684
Genome browser
AA seq
1184 aa
AA seq
DB search
MTGQLVQYGQHRQRRSFSRISEVLDLPNLIEIQSSSYEWFLEEGLREMFRDISPIEDFTG
NLSLEFVDYSLADPKYPVDESKERDVTYAAPLRVKVRLHNKETDEVKEQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFHDKTDKNGKRGFGATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIELLGDNEYLQNTLEKDNTENTEKALLEIYERL
RPGEPPTVESAKSLLYSRFFDPKRYDLANVGRYKMNKKLHIKNRLFNQTIAETLVDPETG
EILVEAGTVIDRRVLDRLIPNLENGVGFHTVSQAGGVLEDDVTLQSIKIYAPNDDEQKEI
TVISNAYIEDKIKNVTPADIISSISYFFNLLHGVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTQSIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINTLSTFAKVNKFG
FIETPYRRVDPETNKVTDQIDYLTADEEDNYVVAQANSRLNEDGSFVEEEVVARFRGENT
VYSRSSIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFVGTG
MEHLAARDSGAAVIAKNGGIVEFVEAKEIRVRRIENVEGNEVKGDVDTYRLQKFIRSNQG
TSYNQRPIVKVGDRVEKRDILADGPSMERGEMALGRNVLVGFMTWDGFNYEDAIIMSERL
VKDDVYTSIHIEEYESDSRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKIFNREDGDEL
PPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPIDIMLNPLG
VPSRMNIGQVLELHLGMASRSLGLHMASSVFDGANEEDVWETMEEAGMPRDGKTILYDGR
SGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPSVPESFKVLIKELQSLGMD
VKMLTIDDEEIELRDLDEEDDLQPADSLNILPIADEESPVGTIE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtacggtcagcatcgtcaacgcagaagtttttcgagaatc
agtgaagttctagatctcccgaatctgattgagatccaatcgtcttcttacgaatggttc
ttagaagaggggctccgtgaaatgttccgcgacatttcaccaatcgaagatttcacagga
aacctttccttggaattcgtcgactacagcctagcggatcctaagtacccggttgatgaa
tcgaaagaacgggacgttacttacgcagcgccactccgcgtaaaagtgcgtcttcacaac
aaagagacggatgaagtgaaagaacaggacgtcttcatgggcgatttcccattaatgaca
gaaactggtactttcgtcatcaacggcgcagagcgcgtcatcgtttcgcaattagtacgc
tcaccaagcgtctatttccacgacaagacagataaaaacggcaaacgaggttttggcgct
actgtcattccaaaccgtggtgcatggcttgagtatgaaaccgatgcaaaagatgtcgta
tacgtacgcatcgaccgcacacgcaaattgcctgtaacggttcttctgcgtgcgttaggc
tttggttccgaccaggaaatcattgaattgctcggcgataacgagtatttgcagaacaca
ttggaaaaagacaataccgaaaacacggaaaaagcgcttcttgagatctatgagcgccta
cgccctggagagccaccgacagtagaaagcgctaagagcttactctactcacgtttcttc
gacccaaaacgctatgacttggcgaatgtcggccgctacaagatgaacaaaaagcttcat
attaaaaatcgcttgttcaatcagacgattgcagaaacactcgttgatcctgaaacgggc
gagattttagtagaagctggaactgttattgaccgccgtgtccttgaccgcttgatccct
aatttggagaatggcgttggttttcataccgtttcccaagctggaggcgtgcttgaagac
gacgtaacacttcaatccattaaaatctatgcgccaaatgacgatgagcaaaaagaaatc
accgtcatcagcaatgcatatatcgaagacaagatcaaaaatgtaacgcctgcggatatc
atctcgtctatcagctacttcttcaacttgctgcatggcgtcggcaacacagatgatatt
gaccacctaggtaaccgtcgtctgcgttcagttggcgaacttctacagaaccaattccgt
atcggcttgtcccgtatggaacgcgtggtgcgcgagcgcatgtcgatcaacgacacgcaa
tcgatcgtacctcagcaattgatcaatatccgcccggttattgcatcgattaaagagttc
ttcggaagctcccaattgtcccagttcatggaccaaacgaacccgcttgctgaattgacg
cataaacgccgtctatctgcgcttgggcccggtggtttgacgcgtgaacgcgccggcttt
gaagtgcgtgacgttcactactctcactacggccgcatgtgcccgatcgaaacgcctgag
ggcccgaacatcggcttgatcaacacactttcaacatttgcgaaagtgaataaattcgga
ttcatcgaaacaccttatcgccgtgtcgatccggagacgaataaagtcaccgaccagatc
gattacttaacggctgatgaagaagacaactatgtcgtcgctcaggcgaattcacgcttg
aatgaagacggatcgtttgtcgaagaagaagtcgttgcccgcttccgcggtgagaacacc
gtttacagccgctctagcatcgattatatggacgtttctccaaaacaagtcgtgtctgtt
gcgactgcttgtattccgttccttgaaaacgatgactccaaccgtgcgttgatgggagcg
aacatgcaacgtcaagctgtgcctctattgaacccagaagctccgtttgtcggaactggc
atggagcacttagccgcacgtgattcaggcgctgccgtaatcgcgaagaatggcggaatt
gtcgaattcgttgaagcgaaagagattcgcgttcgccgcatcgaaaacgtagaaggcaat
gaagtcaaaggcgatgtggatacgtatcgcctgcaaaaattcatccgttcaaaccaaggt
accagctataaccagcgcccgattgttaaagtcggcgatcgtgtagaaaaacgcgatatc
ctggctgacggaccttcaatggaacgcggtgaaatggcgcttggccgtaacgtgcttgtc
ggattcatgacttgggacggctttaactatgaggatgcgatcatcatgagtgagcgcctc
gttaaagatgatgtctacacgtcgatccatatcgaagaatacgaatcagattcccgtgat
acaaagctcgggcctgaagaaatcacgcgtgatattccaaacgtcggcgaagatgctttg
cgcaacttggacgaccgcggcatcatccgtgtcggtgctgaagtgaaagatggcgacatc
ctagtcggtaaagtaacgcctaaaggggttacggaactgacagcagaagaacgcctgctt
catgcaatcttcggtgaaaaagcgcgtgaagtacgcgatacttcattgcgtgtgcctcac
ggtgcaggcgggatcgtgcttgatgtgaaaatcttcaaccgtgaagatggcgacgaattg
ccgccaggcgttaaccaattggtgcgcgcttatattgtccaaaaacggaaaatctccgtc
ggcgacaaaatggccggacgtcacgggaacaaaggtgttatctcccgcatcttgccagaa
gaagacatgccattcatgccggatggcacgccgatcgatatcatgttgaacccgcttggt
gttccgtcccgtatgaatatcggtcaggtgcttgaacttcacctcggcatggcttcccgt
tctctaggccttcatatggcatcatccgtatttgatggcgcgaatgaagaagatgtctgg
gaaacgatggaagaagctggaatgccacgcgacggaaaaaccatcctttatgatggccgt
tccggtgagccattcgataaccgcgtatctgtcgggatcatgtacatgatcaaactggca
cacatggttgacgataagcttcatgcacgttcaactggaccttactcactggttacgcaa
cagccactcggcggtaaagcgcaatttggcggtcagcgtttcggggagatggaagtttgg
gcacttgaagcatacggtgctgcccatacactccaagaaatcttgacagttaaatcagat
gacgtggtcggccgtgtgaaaacttatgaagcgattgtcaaaggtgaaagtgttccagaa
ccaagtgttccagaatcattcaaagtattgatcaaagagcttcaaagtttgggtatggac
gtcaaaatgctcacaatcgatgatgaagaaatcgaattgcgcgatttggatgaagaagac
gatcttcaacctgcagattcacttaatatcttgccgatcgccgacgaagaatcaccagta
ggcacgattgaataa
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