Prochlorococcus marinus subsp. marinus CCMP1375: Pro_1657
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Entry
Pro_1657 CDS
T00137
Symbol
cafA
Name
(GenBank) Ribonucleases G/E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pma
Prochlorococcus marinus subsp. marinus CCMP1375
Pathway
pma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pro_1657 (cafA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pma03019
]
Pro_1657 (cafA)
03009 Ribosome biogenesis [BR:
pma03009
]
Pro_1657 (cafA)
Enzymes [BR:
pma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pro_1657 (cafA)
Messenger RNA biogenesis [BR:
pma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pro_1657 (cafA)
Ribosome biogenesis [BR:
pma03009
]
Prokaryotic type
rRNA processing factors
Pro_1657 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AAQ00701
UniProt:
Q7VA12
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All DBs
Position
1518963..1520798
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AA seq
611 aa
AA seq
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MPQKIIIAEQERIAALLTDGRVDKLIVAQCHYQIGDIYLGIIENVKPGIDAAFVNIGPSE
KNGFLNVNDLGPLRSKQTAASINELLRPSQPVLVQVLKEPTGNKGPRLTGNISLPGRYLV
LQPTGQGVNVSRQINTETERNRLKALGVLIKPPGTGLTVRSEAAEVTEELIIDDLENLLK
KWELIQQTRDRANPPSLLSRDEDFIHRVLRDNTNSDLSEVIVETTEASDKAKRFLTPSNK
NVTVECLSESVNLLQHYQIDIAILNALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFASA
NSSETVLWTNCEAAIEIARQLKLRNIGGIIIVDFIDMDSRRDQLQLLEYFTSAIKDDSSR
PKISQLTELGLVELTRKRQGQNIYELFSKECSACSGLGHISNIPQKNQIQPSALNLGLVE
STPVLQNEVKLNNNNKSKNNDQNELSDSINLSKNVNRDNNLDQPIIKQEQIEIKMNEDEE
YVFSSLGLNPTLMLDNQTNHENLSIQIIKAESHKKITTNKTEEKQSSSEIKKEKGNSRVF
SSLEEDEESILDDSNKDNELVSDSSKQDEINNQIETSVELINSQSTSIDPESSEQDLEET
RRRRRRSSAAN
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaaaaaattatcatcgcagagcaagagcgaatagctgccttgcttaccgatgga
agagtagacaaattaattgtcgcccagtgtcattatcaaattggagatatttatcttggt
ataatcgaaaatgtaaagcctggaatagatgcagcctttgtaaatatcggtccaagtgaa
aagaatgggtttttaaatgtaaatgatctaggccctttaagatcaaagcaaactgcagca
agtattaatgaattactcagacctagtcaaccagtattagttcaagtactaaaagaacct
actggaaataaaggtccacgtttgacaggtaatatttctttgccaggacgatacctagtt
ctacagccaactgggcaaggagtaaatgtatctcgtcaaataaatactgaaactgagcgc
aatagattaaaagctttaggggtattaattaagcctccaggaacaggccttacagttcgt
tcagaagctgcggaagtcacggaagaattaataatcgatgatcttgaaaatcttcttaag
aaatgggagttaatacaacaaacaagagaccgtgcaaatccgccttctcttctaagtcgt
gatgaggatttcatccaccgtgttcttcgagacaacacaaattctgatctttctgaagtt
attgttgaaacaacagaagctagtgataaggctaaaagatttcttacaccaagcaataaa
aatgtaactgtagaatgtttaagtgagagcgttaatttactacagcattatcaaattgat
atagcaatattaaatgctcttaagcctagagtagatttaccttctggtggatatataata
attgaaccaacagaagcattaacggtaattgatgttaattcagggtcatttgcttcagcc
aattcaagtgaaactgttctctggacaaactgtgaagctgcaatagaaatagcaagacaa
ttaaaactaagaaatataggtggaattattattgttgattttattgacatggattcacgt
agagatcagttgcaactcttagaatatttcacatctgctataaaggatgattcttcccgc
ccaaaaatctcacaattaactgaactaggtttagtagagttaactagaaaaaggcaaggt
caaaatatttatgaactatttagcaaagagtgttcagcgtgttctggtttaggtcacatt
tcaaatatacctcaaaagaatcaaatacaaccctctgctttaaatctagggttggttgaa
tctacacccgtacttcaaaatgaagtgaagttaaataataataataaatccaaaaataat
gaccaaaatgaactatcagattcaataaatttatcgaaaaatgtgaatcgggataataat
ttagaccaaccaattattaagcaagagcaaattgaaataaaaatgaatgaagatgaagag
tatgtgtttagctcgcttggcctgaatccaacattaatgttagacaatcaaaccaatcac
gaaaacctttcaattcaaataataaaagctgagagtcataaaaaaataacaactaataaa
acggaagaaaaacaaagctcttcagaaatcaaaaaagaaaaaggaaattcaagagtattt
tctagtctagaagaggatgaggagtcaatcttggatgattccaacaaagataatgaactt
gtgtcagattcttccaaacaagacgaaataaacaatcaaatagaaacttccgttgaatta
ataaactcacaaagcacctcgatagatccagaatcctcagaacaagacctggaagaaact
agacgccgtaggcgtcgttcttctgctgcaaattaa
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