Papilio machaon (common yellow swallowtail): 106715928
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Entry
106715928 CDS
T05138
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106715928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106715928
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106715928
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106715928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
106715928
NCBI-ProteinID:
XP_014364797
LinkDB
All DBs
Position
Unknown
AA seq
2427 aa
AA seq
DB search
MNLDSLTFSLSRIHYLVINLSKKNFKQTSQELSQIVSHYGLEAENQLLRSLLTEAAKASW
DTDRTGPAVNSIHASLLAQYLGSLLSHPAKSTVVCRAVDNPNRSVQKILKPSNTLLNRLS
RLLKLTTAEDVTLSLVLRRYSSKTEITALAKQHLKKRFLDLVQCYLDAEHGHQAERAGLQ
ECSPEVLQTLLISLAYENFRLAPVTKELFVKRLRVDFPREVVPIVLAPLLYPDDTQTPLE
EMSTADDMAVAMMDNSLAEIIRDIGYNFTSSFEECKNNMLNFGAREPTAIDVARIISMMV
RFHTTVPDGPQLQTPGNFWMNHETKKEGITHGHGESWNAEIFVQTLKELASNLNWKEVIL
QLDHPEFIVPDRQGLSLLFSILRLGLQSAGYPSNIFPVEYLCRRWTNLEGQMSLITNILK
HPDIFSLADYPFHPVSIDILKSLPESDNKEIATWRCLYLVELLLYASERGYYMQVHELFK
FPLQHCPDVLMLALLQINAPITVFQQELLSTLIPIFLGNHPNSGIILQHAWHSQNPNIKP
IIMHAMAEWYIRGDSDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKL
DKWLTDKIRDHGETFVSAMVKFLQRRCPPVMGKPPEEQLPKAAQLPPETIGTMLTCLQLC
APNVVQELQEAIYNVVATCQTLIINKTRQTMAGIARPHTRVIETPFNPAALGGQLFTPHV
DSIANLTPNVANMTLGAPANSAFAMPGTLGPLVPPPGSPSRLLGPGPNSPYPMMAIPHNP
NIPNMGALRMAQMPPMDKFRLPDQIHFPEIMHNVSKEIEDEANGYFQRIYNHPPHPTLSI
DEVLEMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGLV
PTYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFP
PHLIEYIEYGLQSQEPPTKPQGAVLPASLAAMLSQNTVVTVSAPYRTVVGAPNPMSVISK
VANCVAGGIGSRPSIAIATNIDTLLTATDREEKINAPPEAIQDKTAFIFNNLSQLNLQTK
CEELKEIITEEYYPWLSQYLVMKRASIEFNFHALYSNFLDVLKAREVNRLVIIETYRNIK
VLLRSDKSIANFSDRSLLKNLGHWLGMLTLARNQPILLVDIDLKALLLEAYHKGQQELLY
VVPFVAKVLESCARSVAFKPPNPWTMGLMNVLAELHQEPDLKLNLKFEIEVLCKNLSLDI
SELKPTLYLKDPEKHRLIEFQLSQPKMNKEPPVNVIPMNQAIIQAPQMQMMPPQPPMIPV
EEMTLSVPPPPIGIDPTLMGVLGIPEPRFNYLDVNVTSTSAFGQKICFNHHILLFQNYPH
LKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEGRMRTCAHHMMRNL
TAGMAMITCREQIISTISTNLKAAFLTALMPANPQQLVFQKDIVESAAAVIATENMELAC
AFIQKTAVEKALPELDKRLMNDYEVRKQARLENRRYYDPIVLTYQTENLPERVRLRMGGP
MDMQIAVYEEFACNIPGFMPLRDAGMFIPKPSQEQIPQLTFSQVMNPAQVYGTDEMGTLI
TAAEMFLSNAMNTQSFPVQATNMHTLLECLVIARRNRDIVSGCNLLQRAVEGLLDGHIIQ
SGVNAEHVDLMTRYRDIHLRVLKLLEDARVYGHVWTTKQITCCLTECRDELRYNIEAVDC
LIRNHLINMPQYDLALAHLMDNGNNYVAVAFAMQLVQLYLVDDRNNIFVNESDLYHTTET
LVRIMAHPQQPPPEGLATLIETLRINQDPSAYLGERMPLGPTAHIHSGILQVRSREYDDP
PGLQEKTDNVLREWRAMLLSPLTDVEFSQNFNIYVHRMNMNGILKSDDMITRFFRIATQM
CIENVYQQLNEERANPPPVPTKREKYYVMCDSFIKLVTLLIKNTADAGNPTPKLNLLNKI
LGIIAGCLLQDHEDHGNNFQQLPYHRLLLILFLDMNMAEPVLESMNYQVLTAFCHTLRII
RPSVAPGFCYAWLELLSHRAFINRVLAVTPQQKLYHCFIQGWGMYSTLLIDLFKFLDPFL
RNTELAAPVMALYKGTLKVLLVLLHDFPEFLCDYHFGFCDEIPPNCIQMRNLILSAFPRN
MRLPDPFTPNLKVDLLTEIALSPRAVINYATIIPITQFKKDLDAYLKARTPVTFLSELRS
NMQFPQVDNEPGRRYNTQLMNAVVLYVGAQAIAFIRSKGQTPNMTTIAHSAHMDIFQNFT
VDFDYEGRYLFFNALANQLRYPNSHTHYFSCCLLYLFAEANSEAIQEQITRMLLERLIVN
RPHPWGLLITFIELIKNPVYKFWSHEFVHCAPEIEKLAKRRNATSEHQPALHLVRSAQAV
EPTVQEVNSFNFNVGEGQQTTVNSQFK
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactctttaacgtttagcttatcacgaatccattatctcgttataaattta
agtaagaagaacttcaagcaaacaagtcaagagttgtcacagattgtcagtcactatggc
ttggaagcagaaaatcagttgctgaggtctttgctcacagaggcagcaaaggcttcttgg
gatactgatcgcacaggccctgcagtcaacagcattcatgcgtctcttctggctcagtat
ttgggttcgttgttgagccatcccgctaagtcaactgtcgtctgtcgggctgtggacaac
cccaatcgttctgtgcagaagattttaaaaccttctaacactttactcaatcgtctttca
agattgttgaagttaacaactgctgaagatgtcaccttgtcgttggtgttgaggcggtat
tcatccaaaactgagatcacagcgctagcaaaacaacatctgaagaaaagatttttggat
cttgtacagtgttatttagatgctgagcatggtcatcaggctgagcgtgcaggccttcag
gaatgcagccctgaagttttgcaaactctccttataagtctcgcgtacgagaactttcgc
ctcgctccggtaacaaaagagttatttgtgaaacgtttacgtgttgacttccctcgagaa
gtagtgccaatagttttagcacctctgctttatcctgacgatacacaaaccccattggag
gaaatgagtactgccgacgacatggcggtcgcaatgatggataattcacttgcggaaatc
atccgcgacattggatacaactttacatcatcattcgaagaatgcaagaacaacatgttg
aattttggagcgcgagagcctaccgcaatagatgttgcgcgtataatttcgatgatggtg
cgcttccataccacggtgcccgacgggccccaacttcaaactccgggaaacttctggatg
aatcacgaaacaaagaaagaaggaatcacacatggacatggagaatcctggaatgcagag
atatttgtacagacactcaaggagctggcatctaacttgaattggaaagaagtcatattg
caactggatcatccagaatttattgtcccagatagacaaggattgagcctattgttttcc
atcttgcgtttaggtttacagagtgcgggctatccatccaacatattccctgtagaatat
ctatgccgcaggtggaccaacctggaaggacaaatgagtttgattactaatattttgaaa
catccagatatatttagccttgctgattatccattccatccggtgtccattgacatactc
aagtctttgccagaaagtgataacaaagagatagccacctggcgatgtctgtacctagtt
gaattgctattgtatgcatctgagcgaggttactatatgcaagtccatgagctgttcaag
tttcctttacagcattgcccagacgttttgatgctagccttgttgcaaataaatgcacca
atcactgtatttcaacaggaattgctgtctactttgataccaatatttttgggcaaccat
cccaattctggaattattttgcaacatgcatggcattcacagaatccgaacatcaaacca
attatcatgcatgcaatggcggaatggtatatacgcggagacagtgatcaatccaagtta
tcaagaatcttggatgtggcacaagacttaaaagctctatcgctgctactgaatgtccag
tcttttccctttgttattgatttagcttgcctcgcatcaagaagggagtacctgaaattg
gataaatggttaactgataaaatacgagaccacggtgaaacttttgtctctgctatggtt
aaatttttgcagagaagatgtccacctgtgatggggaaaccaccagaagagcagttgccc
aaagccgcgcagttgcccccggagactattggcaccatgctgacgtgtctacagctctgc
gctcctaatgtcgtccaggaattacaggaagcgatctataatgtggtagcgacctgccag
actttaataattaataaaacaagacaaacaatggcgggaattgctcgccctcatactaga
gtaattgaaacaccgtttaaccctgcagctttgggagggcaacttttcactccgcatgtc
gattcgatagctaatcttactccgaatgtcgctaatatgaccttaggcgcaccagcaaat
tccgcattcgcaatgcctggtactttagggcctttggtgccaccccctgggtctccctcc
cgattgttaggaccgggtccaaatagcccttaccccatgatggcaattccgcataatcct
aacattcccaatatgggcgctttacgaatggcgcaaatgcctccgatggacaaatttcgt
ttaccagatcaaattcattttcctgaaattatgcacaatgtttcaaaagaaattgaggat
gaagcaaatggctatttccaaaggatatacaaccaccccccacaccctactctttctata
gatgaggtgctagaaatgcttaagaaattccaagattcgccaaataaaagagagcgagaa
gtattttcatgtatgcttaggaacttatttgaggaatacaaattcttccctcaatatccc
gacaaagaacttcatattaccgcacaattatttggcggtatcattgaaaagggtcttgtt
ccgacttacgtgtccttgggtttagccttgcgatttgttttggatgcacttcggaagccg
gagggctctaaaatgtattactttggtatagcagcgttggatagattcaaatcacgttta
aaggactatcacaaatattgtgagcatgtccgtgctataccacattttagcgaattccct
ccgcatctgattgagtatatcgaatatggactgcagagtcaagagccgcccacaaagcct
cagggtgccgtgttgcccgcaagtctggccgctatgttgagtcaaaatactgttgtcacg
gtttccgcgccatacaggaccgtggtaggtgccccgaaccccatgagcgtgatatccaaa
gtggcgaactgcgtggccggcggcatcggcagtcggccgtccatcgccatcgccaccaac
atcgacacgctgctcacggccaccgatagggaagagaagattaacgcgcccccagaagct
atacaagataaaaccgccttcattttcaataacttgagccaactcaaccttcaaactaaa
tgcgaagagcttaaagaaatcataaccgaagaatactacccttggctttcacaatacctt
gttatgaaacgcgcatccattgaattcaatttccatgccttgtattctaatttcctagac
gtcctgaaggcgcgagaagttaataggcttgtcataattgagacttatcgaaatattaaa
gtgttgttgcgttccgataaaagcatagccaacttcagtgaccgatctttgcttaaaaat
ctcggccattggttgggcatgctcacgctggctcgcaatcaaccaattcttctcgttgat
attgacctaaaagcacttttacttgaagcttatcataaaggccaacaagaactattatac
gtcgtacccttcgtagccaaagttctagagtcgtgcgcaaggagtgtagcattcaaaccg
ccgaacccttggaccatgggattaatgaacgtattagccgaacttcaccaagaacctgat
ttgaagttgaacttaaagtttgaaatagaagtgctttgtaaaaacttaagcttagatata
tcagaattaaaaccaactctgtacctaaaagatcctgagaagcataggcttattgaattc
caactttcccagccgaaaatgaataaggaaccacctgtaaatgttattcctatgaatcaa
gccattatacaggccccgcagatgcaaatgatgccacctcagccaccaatgattcctgtc
gaagaaatgaccttaagtgtaccaccacctcctattggcatcgatcccactttaatggga
gtccttggcataccagagccccgtttcaattacttggacgtaaatgtcacttcaacctca
gcatttggacaaaaaatttgtttcaatcatcacattctgttattccaaaactatccccat
ttaaaacagtttgtcaaacctgctatcgaaaggtctattcaagaatggattcacccagtc
gttgataggtctattaaatacgccctgactacctgtgagcagattatccgtaaagatttc
gccctagatccggacgaggggcgcatgcgtacttgcgcccatcacatgatgcgcaacctg
actgcaggcatggctatgatcacatgccgggagcagatcatcagcaccatcagcaccaac
ctgaaagcagccttcctcacagcactcatgcccgctaatccacaacagcttgtgttccag
aaggatatagttgaaagtgcagcagctgttatagcaacagagaacatggaattagcttgt
gcctttattcagaaaacagccgttgaaaaggcattacccgaacttgataaacgtctaatg
aacgactatgaagttagaaaacaagctagactcgaaaatcgacgttattacgacccgata
gttttgacataccaaaccgaaaatcttcccgaaagagtgagactgcgaatgggaggacct
atggacatgcagattgctgtatatgaagaattcgcttgcaatattcctggcttcatgccc
ctgagagacgctggcatgttcattccaaagccatcccaagagcaaattccacagctcact
tttagtcaagttatgaacccagctcaagtgtatggcacagatgagatgggaactttaata
acagcagccgaaatgttcctgtccaatgcaatgaatacacagagttttcctgttcaagct
accaatatgcacactcttcttgagtgtctcgtaattgcaagaagaaaccgtgatattgta
tccggttgtaacttactacagagggctgtagaaggcctactcgatggccacatcattcaa
tctggagtgaatgcagaacatgttgatttgatgacaagatatagagatattcacctgcga
gtgcttaaactcttggaagacgccagggtgtacggacatgtgtggaccacgaagcagatc
acctgctgtctaacagaatgcagagatgagctgagatacaacattgaagctgttgattgc
ctcatccgtaaccatctcatcaatatgccacaatacgacttagccctcgctcacctgatg
gataatggtaacaattacgtagctgttgccttcgcaatgcagttggtgcaactgtatcta
gttgacgataggaacaacatctttgtgaacgaatctgatttataccacacgaccgagact
ttggtccgcatcatggcgcatccgcaacaaccgccaccagaaggtctggcgacattgatc
gagacgttgagaataaatcaagatcctagcgcttaccttggagagagaatgccccttgga
cccacagcgcatatacattccggcatcttacaagtccggagccgagaatatgatgacccg
cccggccttcaggagaagactgataatgtgcttcgggaatggcgcgccatgcttctcagt
ccattgactgatgttgaatttagccaaaacttcaacatttatgttcatcgaatgaatatg
aacggaatactgaaatctgatgatatgataactagattcttccgtattgctactcagatg
tgcatcgagaatgtgtaccaacagctgaacgaggaaagagccaatccaccaccggtccca
accaaacgggagaaatactatgtaatgtgcgattctttcattaaactcgtcactttactt
ataaagaacaccgctgacgctggaaatccaacacccaaactcaatcttttgaacaagatc
ttggggataatagctgggtgcctgcttcaagaccacgaagatcatgggaataacttccag
cagctgccgtaccaccgcctgctgcttattctcttcctcgatatgaacatggctgaacct
gtcttagaatctatgaactatcaagttctgactgcgttctgccatacgctgcgcatcatc
cgtcctagcgtggcccctggcttttgctatgcctggctggaactgctctcacaccgcgca
ttcataaaccgagtgctcgctgtcactcctcagcagaagttataccattgtttcattcag
ggctggggaatgtattcaacgctgctcatagatctattcaaattcctggacccattctta
agaaacacagaactagccgccccagtcatggcgctttacaaggggacacttaaagtgctc
cttgtattgcttcatgacttccctgaatttctttgcgattatcacttcggcttctgtgac
gaaataccccccaactgtatacaaatgcggaacctgatcctatctgcgttcccgcggaat
atgagactaccggacccattcacgcccaacctgaaagtggacctgctcaccgaaatagcg
ctatcgccccgagcggtcataaactacgcaacgatcatccccataacacaattcaaaaag
gacctagacgcctacctcaaggccaggacccccgttaccttcctttctgagctaagaagc
aacatgcagtttccgcaggtggataacgaacccggccgccgctacaacacgcagctgatg
aacgctgttgtcctgtacgtcggagctcaggcgatcgccttcataagatccaaggggcaa
acgccaaacatgacgaccatcgcccactcagctcatatggatatattccagaacttcaca
gtcgactttgattacgagggacggtatctgttcttcaacgcacttgccaatcagttgcgc
tatccgaacagtcatacgcactacttcagttgctgcctattatatctgtttgcggaggca
aactcggaagctatacaagaacagatcactaggatgctactcgagaggctgattgtgaac
agacctcacccatggggcctcctgattacgttcatcgaactcatcaagaacccagtgtac
aagttctggtcacatgagtttgttcattgcgcgcctgaaatcgaaaagcttgccaagcgc
cgcaatgccaccagtgagcaccagccagccctccacctcgtccgctctgcccaagcagtg
gaaccaactgttcaagaagtaaattcttttaactttaatgttggtgagggtcagcagact
acggttaactcgcaattcaagtga
DBGET
integrated database retrieval system
