Pseudomonas maumuensis: KSS90_23190
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Entry
KSS90_23190 CDS
T07719
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmam
Pseudomonas maumuensis
Pathway
pmam03030
DNA replication
pmam03410
Base excision repair
pmam03420
Nucleotide excision repair
pmam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KSS90_23190 (ligB)
03410 Base excision repair
KSS90_23190 (ligB)
03420 Nucleotide excision repair
KSS90_23190 (ligB)
03430 Mismatch repair
KSS90_23190 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmam03032
]
KSS90_23190 (ligB)
03400 DNA repair and recombination proteins [BR:
pmam03400
]
KSS90_23190 (ligB)
Enzymes [BR:
pmam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KSS90_23190 (ligB)
DNA replication proteins [BR:
pmam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KSS90_23190 (ligB)
DNA repair and recombination proteins [BR:
pmam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KSS90_23190 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KSS90_23190 (ligB)
MMR (mismatch excision repair)
DNA ligase
KSS90_23190 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KSS90_23190 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXH56194
LinkDB
All DBs
Position
5193090..5194799
Genome browser
AA seq
569 aa
AA seq
DB search
MPAMPLLSILMLLPTLFASALAGECPDWSAPQAQAEMARLGETLARWDDHYHRQGKSLVA
DELYDQSRQHLLRLQRCFNLPDAAPDPLASARGPMPHPIAHTGVDKLPDEQAMRRWLAGK
HDVWMQPKVDGVAVSLIFQQGRLVRLLSRGDGVQGHDWSRHIPALGAVTRQLPQPMDLVL
QGELYKRLDGHVQAQAGSVNARGSVAGLLARKQLDTDQGASIGLFVWDWPQGPQSQEARL
EQLAAMGFVDSQRYSIAIDSPEQAAEMRLRWYRSALPFATDGVILRQGRRPPAERWQAKP
PYWIAAWKYPFSQALAEVREVRFRVGRTGKVTPILHVAPVELDDRRISQVSLGSLARWHK
LDIRPGDQVAISLAGLTIPRFDAVVHRMLVRRPVASPPAGRYDAHSCWQAGADCDDQFIA
RLSWMSGKQGLAMQAIGPGTWRRLVDAGLVTTLVDWLELDTQALAAVPGLGAARARQLHD
NFAAARLQPFRQWLTALGAPLPQGVPLEADWSTLAARSADAWQALTGVGGARSKQLEVFF
ATEDVQAIATQLGGYRIAGFQRSNDTAEQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgccggccatgcctttgctgtcgatactcatgctcctgccgactcttttcgccagcgcg
ctggccggcgaatgtccggattggagcgcgccccaggcgcaagccgaaatggcccggctg
ggcgagaccctggcccgctgggacgatcactaccatcgccagggcaagtcattggtggcg
gacgagctctatgaccagagccgccagcacctgctgcgcctgcaacggtgcttcaacctg
ccagacgcggcgcccgacccgctggccagcgcacgtggcccgatgccccatccgatcgca
cacaccggcgtcgacaagctccccgacgagcaggcgatgcgccgttggctggccggcaag
cacgacgtctggatgcagcccaaggtcgatggcgtcgcggtttccctgattttccagcag
ggccggctggtccgcctgctcagccgcggcgatggcgtccagggccatgactggagccgg
catattcccgcgctgggcgccgttacccggcaactgccgcagcccatggacctggtgctg
caaggggagctgtacaagcgcctggatggccacgtgcaggcccaggcaggcagcgtcaac
gcacggggcagcgtggccgggctgctggcacgcaagcaactggacactgaccagggcgcc
agcatcggcctgttcgtctgggattggccgcagggaccgcaatcgcaggaggcgcgcctc
gagcagctggccgccatgggttttgtcgacagccagcgctacagcatcgccatcgacagc
ccggagcaggccgccgagatgcgcctgcgctggtatcgctccgccctgcccttcgccacc
gatggagtgatcctgcgccagggccgccgcccgcccgccgaacgctggcaggccaagccc
ccctactggatcgcggcctggaaataccccttctcccaagcactggccgaagtgcgcgaa
gtgcgctttcgcgttgggcgcacgggcaaggtgacaccgatcctgcacgtggcccctgtc
gagctggatgaccgtcggatttcacaggtcagcctgggctccctggcgcgctggcacaaa
ctcgacattcgcccgggcgaccaggtggctataagccttgccggcctcaccattccgcgg
tttgacgccgtggtacatcgcatgctcgtacgacggcccgtcgcgtcaccgccagcgggc
cggtacgacgcccatagttgctggcaagccggcgctgactgcgacgatcaattcatcgcc
cgcctgagctggatgagcggcaagcagggactagccatgcaggcgatcgggccgggcacc
tggcggcgactggtggatgccgggctggtgaccaccctagtggactggctggagcttgat
acccaggccctggcggcggtgccgggcctcggcgctgccagggcccgacagcttcatgac
aattttgcagcggctcgcttgcaacccttccgccagtggttgacggcgctgggcgcgccc
ttgcctcagggagtgccgctggaggccgactggtcgacacttgccgcgcggtcggctgat
gcatggcaagccttgacgggcgtcggtggcgcaagatcgaaacagctcgaggtatttttt
gcaacagaagatgttcaagccattgctacgcaactgggcgggtatcgtatcgccggtttc
cagcgctcgaacgacaccgccgaacaatga
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