Pseudomonas mandelii: OU5_5425
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Entry
OU5_5425 CDS
T03626
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03030
DNA replication
pman03410
Base excision repair
pman03420
Nucleotide excision repair
pman03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OU5_5425 (ligA)
03410 Base excision repair
OU5_5425 (ligA)
03420 Nucleotide excision repair
OU5_5425 (ligA)
03430 Mismatch repair
OU5_5425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pman03032
]
OU5_5425 (ligA)
03400 DNA repair and recombination proteins [BR:
pman03400
]
OU5_5425 (ligA)
Enzymes [BR:
pman01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OU5_5425 (ligA)
DNA replication proteins [BR:
pman03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OU5_5425 (ligA)
DNA repair and recombination proteins [BR:
pman03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OU5_5425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OU5_5425 (ligA)
MMR (mismatch excision repair)
DNA ligase
OU5_5425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OU5_5425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AHZ72504
UniProt:
A0A024EHS6
LinkDB
All DBs
Position
6006890..6009247
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKTRILELRAELDQHNYRYHVLDEPSVPDVEYDRLFHELKALEAAHPELVTSDSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFEESDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGTGWPATLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQISA
DIADTHIGNLKQLQTWGLPISRELKLAHGIDECLDYYRDIGERRNGLAYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLRPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVIMDRRPDDARPVQIPQQCPVCGS
HVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFEDIVDLEGFAELSSNKLLAAIKDSKTPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIAKLLEHGL
QIQDQGELGAEFAASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLESVMSADWLDMRQAL
PEKQANSVRAFFAVAENRQIAEAAEQQLRDFGMHWQSEKKVVEGLPLAGQTWVLTGSLEL
MSRDIAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVDFLKK
HGISV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaacccgcattctcgagctgcgcgctgagctggatcagcataactac
cgttaccacgtactagacgagccaagcgttccggacgtcgaatacgatcgtttgttccat
gaactcaaggcccttgaagccgcccatcccgagctggtcaccagcgactcgccgacccag
cgcgtcggcagcgcggcgctgtcggcgttcacccaggtacgccacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaagcgacatgcgcgagttcgatcgccgggtaacggaa
ggtctcgacttgccggccggcgacctgttcggcggcggtgcggcggtggaatacagctgc
gaacccaagctcgatggcctggcggtcagcctgctttatcaggacggcgtgttggtgcgc
ggtgcgacgcgcggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaacatcccgctgaagctacagggaaccggctggccggcgaccctggaagtgcgcggc
gaagtgttcatgtccaaggccggtttcgagcgcctgaacgccacgcagctggaggtcggc
ggcaagaccttcgccaacccgcgcaacgcggcggcgggcagcttgcggcagctggattcg
aagatcaccgccaaccgtccgctggagttctgctgctacggtatcggccagatttcggcg
gacatcgccgatacgcacatcggtaatctcaagcagctgcagacctggggcctgccgatc
agtcgcgagctgaaactggcgcacggcattgatgaatgcctggattactaccgcgacatc
ggtgagcgccgcaacggcctggcctatgaaatcgatggtgtggtgttcaaggtcaacagc
atcgcgtcccagcgtgagctcggttttcgcgcgcgcgaaccgcgttgggcaattgcccac
aaattcccggccatggaagagctcaccgaactgctcgacgtcgaattccaggtcggccgc
accggtgccgtgacgcccgtggcgcgcttgaggccggtcaaggtcgccggtgtcaccgtg
gccaatgcgacgttgcacaacatggacgaagtggctcgcctgggcctgatgatcggcgac
accgtgatcatccgccgcgcgggcgacgtgattccgcaagtggtgcaagtgatcatggat
cgccgcccggacgacgcgcgtccggtacagattccgcagcagtgcccggtgtgcggctcg
catgtcgagcgcacgcaactggtcaagcgcagcaagggtcgcgagaccgtcagcgaaggg
gcggtttaccgctgtgtcggtcgtctggcctgcggtgcgcaactcaagcaggcgatcatt
cacttcgtctcccgtcgtgcgatggacattgaaggcctgggcgacaagagcgtcgagcaa
ttggtcgatgaggggctggtgagttctcccgccgatctgtatgccttgaagttcgaggac
atcgtcgatctcgaaggctttgccgagctgtcgagcaataaactgctcgccgcgatcaag
gacagcaagacaccgagcctggcacggttcatctatgccctcgggattcctgacgtcggc
gaagagacggccaaggtcctggcgcgctctctcggctcgctggagcgggttcagcaggcg
ttgccgcaagtgctcacgtacttgccggatgtcggcctggaagtggctcacgagattcac
agcttctttgaagatgcgcataaccagcaggttattgcgaagttgctcgagcacggcctg
cagattcaggatcagggcgagctgggggccgaatttgccgccagcacgacgctgggcggt
ttcctcgacaagctgaacattccgtcggtcgggccgggcggggcgcagaagctggcggac
aagtttggttcgctggaatcggtcatgagcgctgattggctggacatgcgccaggccctg
ccggagaagcaggcgaattcggttcgagcgtttttcgcggttgctgaaaaccgtcagata
gctgaggcggctgaacagcagttgcgtgatttcggcatgcattggcagagcgagaaaaaa
gtcgtcgaaggcctgccgctggctgggcagacctgggtgctgaccggttcgctggaattg
atgagccgtgatatcgccaaggacaaactcgaaagcctcggggccaaggtggccggttcg
gtgtcggccaagacccattgcgtggtggccgggccgggtgccggttcgaagttggccaag
gccaatgaattgggactgaaagtgctcgatgaagaggcgtttgtcgatttcctgaaaaaa
cacggcatctctgtctga
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integrated database retrieval system
