Pseudomonas marincola: PMYSY11_0696
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Entry
PMYSY11_0696 CDS
T07318
Symbol
rpoC
Name
(GenBank) RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMYSY11_0696 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmao03021
]
PMYSY11_0696 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_0696 (rpoC)
Enzymes [BR:
pmao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMYSY11_0696 (rpoC)
Transcription machinery [BR:
pmao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PMYSY11_0696 (rpoC)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PMYSY11_0696 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
ApbA_C
DUF3150
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
CAE6891776
LinkDB
All DBs
Position
PMYSY11:758029..762228
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFLGSGNLPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRIHETINEKDGSVTKNTRIVDTTVGRALLYQIVPAGLSYDVVNQSMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDSATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDRHGEEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSIQVKNGGQIRL
HNLKHVERVDGCLIAVSRSGELALADEFGRERERYKLPYGAVISVKEGDKVDPGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAIKM
VGDDGKDLLLPGTDVPAQYFLPSNALVGVQDGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVAESGDSTFIKGDQMELTAVLGENERLAAEDKFIAKYSRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNFSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgctcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaaccagagcgtgacggtctgttctgcgccaaa
atctttggcccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgtggtgttatctgtgagaagtgcggcgttgaagttgcactggccaaagttcgtcgtgag
cgtatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgagccgtatcggtttgctgatggacatgaccctgcgtgatatcgaacgtgttctctat
ttcgagagctatgttgttatcgatccgggcatgaccacgcttgaaaaaggtcagctgctg
aacgatgagcagtacttcgaagcactggaagagttcggtgacgacttcgacgcccgtatg
ggtgccgaagctgttcgcgagcttttgcacgctatcgatctggagcacgaaattggccgt
ctgcgtgaagagattccgcaaaccaattcggaaaccaagatcaagaagctgtccaagcgt
ctgaagctgatggaagcgttcctcggctcgggcaacttgcctgagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgttggtaccgcttgatggtggccgtttc
gcaacgtccgacctcaacgacctgtaccgccgtgtgatcaaccgtaacaaccgtcttaag
cgcctgctcgatctgtcggcgccagacatcatcgtgcgtaacgaaaagcgcatgctgcaa
gagtcggttgacgccctgctggacaacggccgtcgcggtcgcgccatcactggttcgaac
aagcgtccattgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggcacttgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctcgctaccaccatcaaagctgccaagaagatg
gttgagcgtgagctgccagaagtttgggacgttctcgctgaagtaattcgcgaacaccca
gtgcttctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggtt
ctgattgaaggtaaggctatccagctgcacccgttggtttgtgcggcgtacaacgccgac
ttcgacggtgaccagatggctgtgcacgtaccgctgacgctggaagcccagctcgaagcc
cgtgcattgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gtgccgtcgcaggacgttgtattgggtctgtattacatgacgcgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtattcgctgacttgcaggaagttgaccgcgttttccgcgccggt
gaagcctctctgcacgctcgcgtaaaagtgcgtattcacgaaaccatcaacgaaaaagat
ggcagcgtgaccaagaacacccgcatcgtcgacaccactgtcggccgcgcgctgttgtac
cagatcgtgcctgctggcctgtcctatgacgtggtcaaccagtcgatgaagaagaaggct
atctccaagctgatcaaccagtgctaccgcactgtcggcttgaaagacaccgttatcttc
gctgaccagttgatgtacaccggtttcgcctattcgaccatctcgggtgtgtcgatcggt
gttaacgacttcgtcatcccggatgaaaaagcacgcatcatcgacagtgcaaccgaagaa
gttaaagagatcgaaagccagtacgcatcgggcctggtaactcagggcgagaagtacaac
aaggttatcgacttgtggtccaaggccaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggttgttgaccgtcacggcgaggaagttgaccaagagtccttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgcagcccagattcgtcagctt
gccggtatgcgtggtctgatggccaagccggacggctcgatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtctggcggataccgcacttaaaacagctaactccggttatctgacgcgccgtctg
gtagacgttgctcaggatctggtggtaactgaagttgattgcggcactgaacatggcctg
ctgatgacaccgcacattgaaggcggtgacgtagtagagccgctgggtgagcgcgtattg
ggccgagtaatcgccaaagacgtattcaagcctggcactgaagacgtaatcgttcctgcc
ggtacgctggtagacgagcagtgggttgagttcatcgagctgaacagcatcgacgaagtt
atcgtgcgctcgccaatcagctgtgaaactcgttatggcatctgtgccaagtgctacggc
cgcgatctggcccgtggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacacagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccgtacttcggctgctgacagcattcaggttaagaacggcggccaaatccgcctg
cacaacctcaagcacgttgagcgtgtggacggctgcctgatcgcggtatcgcgttctggt
gaactggccctggctgacgagttcggtcgtgagcgtgagcgttacaagctgccttacggt
gctgtgatctcggttaaggaaggtgacaaagttgatccgggcgccatcgtcgccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacgttcgtaggcatg
gaagaagggatcaccatcaagcgtcagactgacgaattgactggtttgaccaacatcgaa
gtgcttgatccgaaagatcgtccggctgctggtaaagacattcgtccggccatcaagatg
gttggcgacgatggtaaagacttgctgctgccaggtaccgacgtaccggctcagtacttc
ctgccgtcgaacgcattggtcggtgtacaggatggtgcgcaaatcgccatcggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccacgc
gtagctgacttgttcgaagcgcgtcgtccgaaagaagcatcgatcctggctgaaatcagc
ggcacgatctccttcggtaaagagaccaaaggcaagcgtcgtctggtgattacaccaacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtgttcgaa
ggtgaacaggttaacaagggtgaagttatctcggacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtaagcgcgctggccaagtacatcgttaacgagattcaagacgtt
taccgtctgcaaggcgtgaaaatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaagtggcagagtccggcgactcaaccttcatcaagggtgaccagatg
gagttgaccgcggtactgggtgagaacgagcgtctggctgcagaagacaagttcatcgcc
aagtacagccgcgtgttgctgggtatcaccaaagcgtcgttgtcgactgagtcgttcatc
tcggcagcctcgttccaggaaactacccgcgttcttacggaagcggcagtgactggtaag
cgtgactacctgcgcggcttgaaagagaacgtggttgtgggtcgtttgatcccggccggt
accggtttggcttatcacagcgagcgcaagcgcaagcgtgatgcagacaagccagttcgc
gttagcgccagtgaagtggaagctgcactgaccgaagcgttgaacttcagcggaaattaa
DBGET
integrated database retrieval system
