Peromyscus maniculatus bairdii (prairie deer mouse): 102907472
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Entry
102907472 CDS
T11302
Symbol
Col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102907472 (Col25a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102907472 (Col25a1)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102907472 (Col25a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102907472
NCBI-ProteinID:
XP_006970439
Ensembl:
ENSPEMG00000000474
UniProt:
A0A6I9KTE8
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Position
6:109959238..110362082
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AA seq
666 aa
AA seq
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MLVKKLAGKGGGREPGSEDPCPLGQRCAGSMASCAALATLLSVVAVVFCLYLGVKTNDLQ
ARIAALESAKGTPSFRPLPDTLDELKAMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
PPGQKGSIGAPGTPGTNGQKGEPGSPGAAGQSGLPGPKGEPGKEGEKGDAGENGPKGDAG
EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
KGERGEAGPPGRGERGDPGAPGPKGKQGESGARGPKGSKGDHGDKGDSGALGPRGPPGQK
GDPGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGVDGEQGL
KGSKGDVGDPGMPGEKGGIGLPGLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHGPP
GPMGPHGLPGPKGASGLDGKPGSRGADGPIGPHGPAGPKGERGEKGAVGEPGPRGPYGLP
GKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPM
PGCWQK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgaagaagcttgcagggaaaggagggggacgagagcctggatcagaagatccg
tgccccttgggacagcgttgtgccggctccatggcctcgtgtgcggccctggcgaccctc
ctgtcagtggtggctgtggttttttgcttgtatcttggggtgaaaaccaacgacctccag
gcgaggattgctgctcttgaatctgctaaaggaaccccttcctttcgcccgctgcctgac
accctcgatgagctgaaggctatggttcaggagaaagtggagcgtctcttggcacagaaa
tcctatgaacatatggctaaaataagaatcgcaagagaggcaccttcagagtgcaactgc
ccggcaggtcctccggggaaacgagggaagaggggccgaagaggagagtctggtcctcct
ggtcaacctggtccccagggcccccctggtccaaaaggtgataagggagaacaaggtgat
caggggcctcggatggtgtttcctaaaatcaatcatggctttctctctgctgatcagcag
ctcattaaacgccggctgattaagggtgaccaaggacaggcagggcctccaggaccccca
ggccctcctggtccaagaggcccacctggggacacagggaaggatggcccccgaggaatg
ccaggagtacccggtgaaccagggaaaccaggagaacaaggcttgatgggacctctgggc
cctccaggacaaaagggttccattggagcacctgggaccccaggcacgaatgggcaaaag
ggtgagcctggatcacctggagcggcagggcaaagtggactcccgggaccaaagggcgag
cctggaaaagaaggagaaaagggagatgctggagaaaatggccccaaaggtgacgcaggt
gaaaagggtgaccctggatcatctgctgcaggaattaagggagaacctggagaatctggt
cgtccaggacaaaagggtgagccagggctgcctggactgcctggactcccggggatcaag
ggagaaccaggcttcattggtcctcaaggagagcccggcttaccagggttaccaggaaca
aaaggtgaacgtggagaagcagggcctcctgggagaggtgaacgaggggatcctggagcc
ccaggcccaaaggggaaacaaggtgaatcaggagctagaggcccaaaggggtcaaagggt
gatcatggagataaaggagactctggagctctgggaccacggggtccacctgggcagaag
ggagatccaggagctactgagatcatagactacaatggcaacctccacgaggccttacag
aggatcaccaccttaaccgtcacgggcccccctggacctcctggacctcaaggactacaa
gggccaaagggtgagcaaggatctccaggaattcccggagttgatggagaacagggactc
aaaggctccaagggagatgtgggggacccagggatgccaggtgaaaaaggaggaattggc
cttcctggactcccgggtgccaatggagtaaaaggagagaaaggagactctgggttgcca
ggtcctcagggtccttctatcataggcccaccaggccctccaggtccccatggcccgcct
ggccccatgggaccccatggacttcctggaccaaagggagcatctggcttagacgggaag
ccaggatcccggggtgcagatggtcctataggaccccatggccctgcaggtcccaaagga
gaaagaggagaaaaaggagctgtgggagagcctggacccagagggccctatgggctgcct
ggcaaagatggagagcctggtcttgatggcttccctggtcctcgaggcgagaagggtgac
ctgggagaaaagggagaaaagggattccgtggcgttaagggggaaaagggggagccaggc
cagcctggcctggatgggctggatgccccttgccaattgggacctgatggattacccatg
cctggctgctggcaaaagtga
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