Peromyscus maniculatus bairdii (prairie deer mouse): 102911907
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Entry
102911907 CDS
T11302
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102911907 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102911907 (Cnot1)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102911907 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102911907 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102911907
NCBI-ProteinID:
XP_076427770
Ensembl:
ENSPEMG00000014673
LinkDB
All DBs
Position
5:9411202..9500844
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMDVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMTKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgtctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacgttgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcaccccatttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtcatttttggtcttgcccttttgaattcttctagctcagat
ctcaggggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgctttcctcaagacactgcgcagagattttccccaagagcgttgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcttg
cctgattctggaggggtagctaaaaccatgatggagagctctctggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccattacagagcatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgaaggcgcacaggcacacacctggaatgtagaggtt
ttgattgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaaaggacttcacaatgtggtttatggt
attcagaggggcctgggcatggacgtgtttccagtggatttcatatatcggccttggaaa
catgcagaaggccagctctccttcatccagcattccctgataaacccagaggtcttctgc
tttgctgactatccgtgtcatactgttgccactgacattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgaacaagtgaaacagctcttcagcttccccatcaaacactgt
ccagacatgttggtattggccttacttcaaatcaacacctcctggcacaccttacgccat
gaactcatctctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatggtcagggacagtctccatcaattcgccaacttataatgcac
gcaatggcagaatggtacatgagaggggaacagtatgatcaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccttgtcaatgctgctaaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcccggcgggaatacctcaaacttgacaagtgg
ctaacagataaaataagagaacatggggagccttttatacaagcttgcatgactttttta
aagagaaggtgcccttctattttgggcggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctacaggcttgtgcaggg
agtgtttctcaggagttatccgagaccatcctcaccatggtagccaattgcagtaacgta
atgactaaggccagacagccaccacctggagtgatgccaaaaggtcgccctcctagtgct
agcagtctggatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggttttcctccaaatttg
ggctctgcattcagtacccctcagtcaccagcaaaagcatttccacctctctcaacccca
aatcaaacaacggcgttcagtggtattggaggactttcatcacaacttccagtaggtggt
cttggcacaggaagcctgactggtataggaactggggctcttggacttcctgcagtgaac
aacgacccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtgtggccagaggccaatcaacacttc
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
catccaaccatgtctgttgatgaggtactagaaatgctacagagatttaaagactctact
ataaaaagggagcgagaagtatttaactgtatgctgaggaacttgtttgaagaatatcgg
tttttcccccagtatcctgataaagaattacatataacagcctgcctgtttggtggcata
attgagaaaggactggtcacttacatggcattgggtctggccctgagatacgttcttgaa
gccttacggaagccttttggatcaaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgtcagcatttggcttctattagtcac
tttatgcagtttccacatcatttgcaggagtacatcgaatatggacagcagtctcgagat
cctcctgtgaaaatgcagggctctatcacgacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgcgggtcaggttaacacaatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaagccaacgggagtt
agctttaagaaagatgtgccaccttctataaatacaacaaatatagatacattgcttgtg
gccacagatcaaactgagaggattgttgagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaatctctcacagtcaaatatgacccagaaggtcgaagagcttaaagaa
actgtgaaggaagaatttatgccttgggtttctcagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcctgtattcaaactttcttgacacattgaaaaatccagaa
tttaacaagatggttctgaatgagacctacagaaacattaaggtgctgctgacctctgat
aaagctgcggccaatttctcagatcgttctttgctgaagaatttgggacattggctggga
atgatcacattagctaaaaataagcccatcttgcacacggacttggatgtgaaatctttg
ctgctagaggcttacgttaaaggacaacaagagttgctttacgtagtgccctttgttgcc
aaagttctagagtccagcattcgtagtctggtttttagaccaccaaacccctggacaatg
gcaattatgaatgtattggctgagctgcaccaggaacatgacttaaagttaaacttgaag
tttgaaattgaggtgctctgtaagaaccttgcattagacatcaatgagctcaaacctgga
aacctgctgaaagataaagatcgcctgaagaacttggatgaacaactctctgctccaaag
aaagatgtcaaacagccagaagagcttcctgcaatcacgacaacaacaacttcaacaaca
ccagctaccagtactacgtgtacagccacagttccaccacagcctcagtacagctaccac
gacatcaatgtctattctcttgcaggcctggcaccacacattactctaaaccctacaatc
cctttgtttcaggctcacccacagttgaagcagtgtgtgcggcaagcaattgaacgggct
gtccaggagctggtccatcctgtggtagatcggtcaattaagattgccatgacgacttgt
gaacagatagtccgaaaggattttgccctggattctgaggaatctagaatgcgaatagca
gctcatcacatgatgcggaacttgacggctggaatggctatgattacttgcagggagcct
ttactgatgagcatatctaccaacctaaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggatcaggctgctgctcagttagctcaggacaattgt
gaattagcttgttgttttattcagaagactgcagtggagaaagcaggccctgagatggac
aagaggttggcaactgaatttgagctgagaaaacatgctcggcaagagggacggagatac
tgtgatcctgttgtgttaacatatcaagcggaacggatgccagaacaaatcaggctgaaa
gttggcggtgtggacccaaagcagctagccgtttatgaagagtttgcacgaaatgtgcct
ggcttcttacctacaaatgacttaagtcagcctacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtattacagagctggag
cagcacctacatgccattccaccaactttggccatgaatcctcaagcccaagctctacga
agtcttttggaggttgtagtgttgtctcggaattctcgagatgcgatagctgctcttgga
ttgctgcagaaggctgtagagggtttattagatgccacaagtggtgctgatgctgaccta
ttgctgcgatacagggaatgccacctcttggtactaaaagctttgcaggatggcagggca
tacggatcaccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtagaagctgtggagttgttaattcgaaatcatttggttaacatgcag
cagtatgatcttcatctcgctcagtcaatggagaatggcttaaactacatggccgtggca
tttgctatgcagttggtaaaaattctgctggtggatgaaaggagtgttgcccatattact
gaggcagatctcttccataccattgaaaccctcatgaggataaatgctcattccagaggc
aatgctccagaaggattaccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctataccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatacttaagaccgacgac
ctcataacaaggtttttccgtctctgcactgaaatgtgtgttgaaatcagttaccgtgct
caagccgagcagcagcacaatcctgctgccaaccccaccatgatccgagccaagtgctat
cacaacctcgatgcctttgtccgcctcattgcactgttggtgaagcactctggggaggcc
accaacactgtcacaaagatcaatctgctgaacaaggttctcggtatagtagtgggagtt
ctcctacaggatcatgatgtgcggcagagtgaatttcagcagcttccctaccataggatt
tttattatgctgctgttggagctcaatgcacctgagcatgtgttggaaaccattaatttc
cagactcttacagctttctgcaatacattccacatcttaaggcctaccaaagctcctggc
tttgtatatgcttggcttgagttgatctcccatcggatctttattgcaagaatgttggca
catacgccacagcagaaggggtggcctatgtatgcacagctgttgattgatttattcaag
tatttagcacctttccttagaaatgtggaactcactaaacctatgcaaatcctctacaag
ggtactctaagagtgctgctagttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatccctcctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaatatgaggctcccagacccattcactcctaatctgaaggtggac
atgttgagtgaaattaacattgcacctcgaatcctcaccaatttcactggagtgatgcca
cctcagttcaaaaaggatttggattcatatcttaaaactcgatctcctgtcacttttctg
tcggatcttcgcagtaacctacaggtatctaacgaacctggcaatcgctacaacctccag
cttatcaatgcactggtgctctatgtagggactcaggccatcgcacacatccacaacaag
ggcagcacgccatcaatgagcaccatcacccactcggcacacatggacatcttccagaat
ctggctgtggacttagacactgagggccggtatctcttcttaaatgccattgcaaaccag
ctgcggtaccccaacagccacacccactacttcagctgcaccatgctctacctgttcgcc
gaggcaaacaccgaggcaatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccgcatccttggggtcttcttatcaccttcattgagctgattaaaaaccca
gcatttaagttctggaaccatgagtttgtacactgtgccccagagattgaaaagttgttc
cagtctgttgcacagtgctgcatgggacagaagcaggctcagcaagtgatggaagggact
ggagccagttag
DBGET
integrated database retrieval system
