Peromyscus maniculatus bairdii (prairie deer mouse): 102912483
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Entry
102912483 CDS
T11302
Symbol
Skic3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102912483 (Skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102912483 (Skic3)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
102912483 (Skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_17
TPR_CcmH_CycH
TPR_16
TPR_8
TPR_12
TPR_11
TPR_9
ANAPC3
ARM_TT21_C
Sel1
ARM_TT21_2nd
TPR_15
Sey1_3HB
BTAD
ANAPC8
Fis1_TPR_C
TPR_30
HrpB1_HrpK
Retrotran_gag_2
PknG_TPR
SNAP
DUF6596
TPR_20
Motif
Other DBs
NCBI-GeneID:
102912483
NCBI-ProteinID:
XP_015860568
Ensembl:
ENSPEMG00000018623
UniProt:
A0A6J0DX89
LinkDB
All DBs
Position
15:56133697..56235202
Genome browser
AA seq
1562 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPEQLLAWQGLASLYEKCNHENAKGDLPGVYQKLLDLYESVDKQKWCDVCK
KLVGLHHQEKRQLEVARTWYKLIKTRREDGADKQELYELWRKLTELLAENIEDQDNETQQ
MLLTAFENALDLADNIPSEDHQVLYRHFIQCLSKFPHETTRLEKACEGMITIYPTIQYPL
EVICLYLIETGSLTDEGQRYCCKLVEMNSKSGPGLIGLGIKALQDKKYEDAVSHLTEGVK
ESPLCIAGWCHLAEAQTKMHRPKEAILSCNQALKNIDNHGVAGGNRHQKNLCLLKAEALL
KLSDCESSEEALRILDQVSDADNTPGLLVLRGLARLNTGAVDEATKIMEDLRASYPDLAE
VHALEALIHFTKKDYLQAEACFQRAIEKDAEVAEYHYQLGLTYWFMGEETRKDKAKALTH
FLKAARLDTYMGKVFCYLGHYYRDIAGDRSRARGCYRKAFELDDTDAESGAAAVDLSVEL
EDTETALAILTAVTQKASAGAAKWAWLRRGLHYLKAGQHSQAVADLQAALRADPKDCNCW
ESLGEAYLSRGGYTTALKSFTRASELNPDSTYSVFKVAAIQQLLGRYTEAITQYQLILKK
EEGYVPALKGLGECYLMMAKTALVDFLDGKAVDYVEKALEYFTWALQHRADVSCLWKLAG
DACTSLHAVSPSKVNVHVLGVLLGQQEGREVLKKDELLHLGGRCYGRALKLMSTSNTWCD
LGINYYHQARHLAETGSGTDGLTELLEKSVHCLKKAVRLDSNNHLYWNALGVVACYRGIR
NYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIGQ
ALIAETVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRETELYKYNILQMNA
VPAAQGVLCKYVERIQNDAPAFTMLGYLNELLQLRREAAEAYQRATALLQSTEDQHAYNV
TVRNWGRLLCSLGDYDRAIQAFKSTPLEELEDIIGFALALFMKGLYKESNKAYERALTVV
KSEQDKAHVLTALAITEYKQGQMDAAKSLLFKCSILKEPTTESLQALCALGLAMQDATLS
KAALNEFLKHVPHKDSYHRCLLTAAVYALQGRGGAVQRQASRAVHSNPADPALWSLLSRV
VAQYTQRNARGGAVAGIVAHILDSNHGKKALLYTAVNQLAMGSSTAEDEKNTALKTIQKA
AFLSPDDPAVWAGLMAACHADDKLALVSNTQPKRVDLHLALLSAVSVSLKDKESLQNYNQ
SLEKWSFSQAVTGLIDTGRISEAESLCTKNLKSNPDQPAVILLLRQVQCKSLLESQKPLP
DAVLEELQKTVMSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGSWSGKLSS
LLKLALLALEVCMANVSGDHWSSLLQEATSEALKVCFCPLAVFLQALLQFNRKMGARETR
RLLERVVYQPGYPSSIVSTARWYLLRHLYAKNDYELIDVLVKNAETHGDKRTLDLNKRLS
SQ
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcaaagaagtgaagactgccctaaaaagtgcaagagatgcaatcagaaacaaa
gagtacaaagaagctttgaaacattgcaagacagtgttaaaacaagagaaaaataactat
aatgcctgggttttcattggtgttgccgcagctgaattagaacagcccgatcaggcccag
ggtgcctataagaaagctgctgagctagagccagagcagctacttgcttggcaggggcta
gcgagtttgtatgagaagtgtaatcatgaaaatgctaagggggatttacctggtgtttac
caaaagctgttggatctctatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aagcttgtgggtctgcatcaccaggaaaagaggcagctagaggtggctcggacatggtat
aaattgataaagacacggcgagaagacggagcagacaagcaagagctttatgagctgtgg
agaaaactgactgagttgctagctgagaatatagaggaccaggataatgaaacccagcag
atgcttttaactgcatttgagaatgcactggatttagcagataatattcccagtgaagat
caccaagtactttataggcatttcattcaatgcttatctaaatttcctcatgagactaca
aggttggagaaggcttgtgaagggatgataactatctatcccaccatacagtatccacta
gaagtgatttgtttgtacttgattgagacagggagtctgacagatgagggacagcggtat
tgttgtaagctagtggaaatgaattcaaagagtggtccaggcctcattggcttaggcatt
aaagctttacaagacaagaagtatgaagatgctgttagtcacctgacagaaggcgtgaag
gaaagccctctctgcatagctggctggtgtcatctagcagaagcccaaaccaaaatgcac
agacccaaggaagctattctttcttgcaaccaagcactgaagaacatagataatcatggt
gtggcaggtggcaaccgtcatcagaagaatctctgtcttctgaaagcagaggctttgctt
aaactctcggattgtgagtcttcagaggaagcacttcgcattcttgatcaggtttcggat
gcagataataccccaggactgctggttcttcgaggcctggcccgtctgaacacaggtgct
gtagacgaggctacaaagattatggaagatcttcgagcttcttaccctgacctggccgaa
gtccatgcgcttgaggctctgatacattttactaagaaggactatctgcaagcagaagca
tgtttccagagagcaattgagaaagacgctgaagttgctgaatatcattaccagcttggg
ttgacatactggttcatgggcgaagagacaagaaaagataaagcaaaggctctgacccac
tttctgaaggctgcaagactggacacatacatgggtaaagttttctgctatttaggtcat
tattaccgcgatatagctggagataggagcagagcccgcggatgttacaggaaagctttt
gaattagatgacaccgatgctgagtctggagcggcagccgttgacctaagtgtggaactt
gaagacacggaaactgctttagctatcttaacagcagtaactcaaaaggcaagtgctgga
gcagcgaagtgggcctggcttcggcgaggactgcactatctgaaagctgggcagcattcg
caagcagtggctgatttacaggcggcactaagggcggacccaaaggactgtaattgttgg
gaatccttgggagaggcgtacttgagcaggggtggctacacaacagccttgaagtccttc
acgagagccagcgagctgaacccagactccacctacagtgtgtttaaggtagcagcgatt
cagcagctcctgggccggtacacagaagccatcactcagtatcagctcatccttaaaaag
gaggagggctatgtgccggccttgaaaggtttgggtgagtgctatctgatgatggcgaaa
acagctttagtggattttctggatgggaaagctgtggactatgtggaaaaagcactggaa
tattttacttgggcactgcagcatcgagctgatgtgtcctgcctttggaagcttgctggg
gatgcctgcaccagcctgcatgctgtttcaccgtcgaaagtgaatgttcatgtcttagga
gtccttctcggtcagcaagaaggaagagaagtattaaagaaagacgagcttctgcatctt
ggaggaagatgctatggtcgtgcattaaagttgatgtcgacatctaatacgtggtgtgat
cttggaattaattactaccaccaagcacgacatctggcagagacaggcagtggcacggat
ggccttaccgagctcctggagaaatctgtgcattgtttaaagaaggcagtgagattggac
agtaataatcacttatactggaatgctcttggtgtggttgcatgttaccgtggtattaga
aattatgcccttgctcagcactgtttcatcaaatcaatccaagcagaacaaattaatgct
gctgcatggaccaatttaggagtgctataccttgcgaccgaaaacatcgagcaagctcat
gaagctttcaaaatggctcagtcccttgacccatcttatttattgtgctggattggacaa
gctcttattgcagagacagttggaagttatgacaccatggatctcttcaggcacactaca
gagctaagtatgcatactgaaggtgccataggttatgcatattgggtttgtacaacatta
caagacaaaagcaacagagaaacagagctgtacaagtacaacatcctccagatgaacgct
gtccctgcggcacagggtgttctgtgtaaatatgtggaaagaattcagaatgacgctcca
gctttcacaatgctgggttatttaaatgaacttctgcagctgagaagggaagcagcagag
gcataccaaagggcaactgcactgttacagtccacagaagaccaacatgcttacaatgtt
acagtgagaaactggggcagattgttatgttcccttggtgactatgacagagctatccag
gcctttaagtcaacgccccttgaggagctggaggacatcataggtttcgcattggcattg
tttatgaagggcctgtataaggagagcaacaaagcctacgagagagccttgactgttgtt
aaatcagagcaagacaaagctcatgtcttgacagctctggcaataacagaatacaaacaa
ggacaaatggatgcagccaagtcactgcttttcaaatgctctattttaaaggaaccaacc
acagaaagccttcaagccctgtgcgctctgggcttggcaatgcaggacgccacgctgtcc
aaagcagcgcttaacgagttcctgaagcacgttccacacaaagacagttaccacagatgc
ctcctgactgcagcagtgtatgccctgcagggccgcggcggggcggtgcagagacaggca
tccagggctgtccacagtaaccctgctgaccctgctctttggtctttgctgtcccgagtt
gttgctcagtatactcaacggaatgcaaggggaggtgctgtagctggcattgtggctcat
attctggattcaaatcacggaaagaaggcattattatatactgcagtaaaccagctggcc
atgggaagcagtacagcagaagatgaaaaaaatactgctttgaagaccattcagaaggca
gctttcctttctccagatgaccctgctgtctgggctgggctgatggcagcctgccatgct
gatgataaactggctttggtcagcaacacgcagccaaagagagtggatttgcacttagct
ttgctgtctgctgtttctgtctcacttaaggacaaagaaagtttacaaaattacaaccag
tcacttgaaaagtggtctttctcacaagctgtcactggtctaattgacacgggaagaata
tctgaagctgaatctctatgcacaaagaatttaaaaagtaaccctgatcagccagctgtt
atcttactgctgagacaagttcagtgtaaatcactcctggaatcacagaagcccctccca
gatgctgtacttgaagaactgcaaaaaacagtcatgtccaattccacctccgttccagcg
tggcagtggttggcacaggtatatcagtcccaaggaatgatgggggctgcagagatgtgt
tacagaaagagtctacaagtggcatcccaacagggcagttggagtgggaagctctcgagt
ctgttgaagctagcactgctagcattggaagtctgcatggctaatgtttcaggtgatcac
tggtcgtccttgcttcaagaggctacaagcgaggccttgaaagtttgcttttgtcctctg
gctgtcttcttgcaagctttgttacagttcaaccgcaagatgggagcaagagagacacgg
cgactcttggagagagtggtgtatcagcctggttatccctcctcaattgtatcaactgca
cgctggtaccttttaagacacctctatgcgaaaaatgactatgagctcattgacgtgttg
gtgaagaatgctgaaactcacggtgataaaagaacactggatctgaacaagaggctgtcg
tcgcagtaa
DBGET
integrated database retrieval system
