Peromyscus maniculatus bairdii (prairie deer mouse): 102927761
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Entry
102927761 CDS
T11302
Symbol
Cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102927761 (Cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102927761 (Cnot10)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102927761 (Cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
ARM_TT21_N
ARM_TT21
TPR_12
TPR_14
TPR_8
TPR_MalT
TPR_7
DUF6058
RdRP_head
SCAF11-like_C
Motif
Other DBs
NCBI-GeneID:
102927761
NCBI-ProteinID:
XP_042137818
Ensembl:
ENSPEMG00000019896
LinkDB
All DBs
Position
7:complement(111947555..112007016)
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AA seq
803 aa
AA seq
DB search
MKSFSLKSVKVCASKSSVRLRQPCSLGQGRRKVKLLEERACPLSIGNGDYFWTSKDTLWD
YVQTLSDQGAEKHEGTGQSSGVTDQEKELSTSAFQAFASGNYDACLQHLACLQDINKDDY
KIILNTAVAEFFKNNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVILY
HLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTHQAEKALHLLAVLEKMISQ
GSSNKNGKNETGNNSNKDGSNPKAESGALIEAAKSKIHQYKVRAYIQMKSLKACKREIKS
VMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLGC
IHFAMSKHNLGIFYFKKALQENDNVCAQLSAGGTDPGKKFSGRPMCTLLTNKRYELLYNC
GIQLLHIGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPTKKGIV
QSIVGQGYHRKIVLASQSIQNTVYNDGQSSAIPVASVEFAAICLRNALLLLPEEQQDAKQ
ENGSKNSSQLGGNPESSESSETCSSKSHDGDKFIPAPPSSPLRKQELENLKCSILACSAY
VALALGDNLMALNHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVTD
VSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYDK
ARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIKRNQLLPAVKAHSDVRKK
PVFQPVHPIQPIQMPSFSTVQRK
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctttcagcttgaagagtgtcaaggtgtgtgcatccaagagctccgtacgcctg
cgtcagccatgttccttaggccagggcagaaggaaggtgaagctgctggaggagcgggct
tgcccgctctccattggcaatggagactacttttggacaagtaaagacacactgtgggat
tatgtgcagacgctgtctgatcagggcgctgagaaacatgaagggacaggccagtcgtct
ggggtcaccgaccaggagaaggagctgtccaccagcgctttccaggccttcgcatctgga
aattatgatgcctgtctgcaacaccttgcctgtctccaagatataaacaaagatgattac
aaaataattttgaatacagcagtagctgaattttttaaaaataatcaaacaacaacagat
aatttgaggcaaacacttaaccagctgaagaatcaggttcactcagctgttgaagaaatg
gatggattagatgatgttgaaaacagcatgttgtattataatcaagcagtcattctttat
catctgcggcagtatacagaggccatatctgttggtgaaaaactttatcaattcatagaa
ccttttgaagaaaagtttgcccaagcagtgtgctttctgcttgtagacttgtatatatta
acccaccaagctgagaaagctctgcatcttcttgctgtcctagaaaaaatgatttcacag
ggcagcagcaacaaaaacgggaagaacgagactggcaataatagcaacaaagatggatct
aatcctaaggctgagagtggagctctaatagaggctgcaaaatccaagatacaccagtac
aaagtcagagcatatatccaaatgaagtccctgaaggcatgcaaacgggaaatcaagtct
gtcatgaacacagctggaaattctgcaccctccctgtttcttaaaagcaattttgagtac
ttaaggggcaattatcggaaagcagtgaagctgttaaatagttcaaacattgccgagcat
ccaggcttcatgaaaacaggtgaatgcttgaggtgcatgttctggaataatcttggttgc
atccattttgccatgagcaagcacaatttggggatcttctactttaagaaggctctgcaa
gaaaatgacaatgtctgtgcccagctgagtgcaggtggcactgatccaggcaaaaagttt
tctggaagacccatgtgtacattgctaaccaacaaaagatatgagctgctgtataactgt
gggatccagctgctgcacatcgggaggcctctggctgccttcgagtgtctgattgaagct
gttcaggtttatcatgcaaatccccgtctttggctacggctggctgaatgctgcattgct
gccaataaagggacttctgagcaagaaactaaagggcttcctaccaaaaagggaattgta
cagtctattgttggtcaaggatatcaccgtaaaatagttctggcatcacagtctattcag
aacaccgtctacaatgacgggcagtcgtcagccattcctgtagccagtgtggagttcgca
gccatctgtctcagaaatgccttgttgctcttaccggaagaacagcaagacgcaaagcag
gaaaatggctccaagaacagcagccagctaggagggaatcccgagagcagcgagagcagc
gagacgtgcagcagtaaaagccatgatggagataagttcattccagccccaccttcttct
ccgctgaggaaacaggaattagaaaacctaaagtgttccatccttgcttgcagtgcttac
gtggctctcgccttaggtgataacctcatggctttgaatcatgcagaccagctccttcag
cagcccaagctgtcgggctctcttaagtttttgggccatttatatgctgcagaagccctc
atctccctcgacagaatatccgatgccattacgcacttgaacccagagaatgtcactgat
gtctccttagggatctcttcaaatgagcaggaccaaggatcagacaagggtgaaaatgaa
gcaatggaatcctctggcaagcgcgcccctcagtgctaccccagttctgtcaactctgcc
cggactgtgatgctcttcaacctgggcagtgcctactgcctgaggagcgagtatgacaaa
gcccgcaagtgtctgcaccaggcggcttcaatgatccatcctaaggaggtgccccctgag
gccatcctgctggcagtctaccttgagctacagaacggcaacacacagctggccctgcag
atgatcaagcggaaccagctgctccccgcagtgaaggcgcactctgacgtgaggaagaag
cccgtgttccagcccgtgcaccccatccagcccatccaaatgccctcattctccacggtg
cagaggaagtga
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