Pecten maximus (king scallop): 117338059
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Entry
117338059 CDS
T07399
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117338059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117338059
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117338059
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117338059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
DUF6857
TFIIA
VPS13_N
ECM10
EIF4E-T
DUF4820
DDHD
EOS1
HAM1_N
Fy-3
Lin-8
Motif
Other DBs
NCBI-GeneID:
117338059
NCBI-ProteinID:
XP_033755133
LinkDB
All DBs
Position
11:complement(36231595..36277182)
Genome browser
AA seq
2440 aa
AA seq
DB search
MNLDSLSFALAEISYSVSNLTKKNFKSSVGEISHLVLQHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGSLLSKPNFVSTLCYAIDNPLHHQKCLRPSVHLFPQISRVLK
LTRVQEVVFGLALINSSSPETRPHAIQFVKQKLPDLIRSYVDAVDSGLRQEGGLQDVDVE
ILHLLLNQIQSNKDNFGLGAEQREAFYRTLRKDFPHNRVPVILGPLLYPESEDLAISKLS
DTTNMPKSVLDASLADMVLEAGYSCTISVEECRGKLLQFGIREITPASVAKVLGMMARTP
SGLSEAGHNQAQMNAAPGSGWPDMGEKADKLGVNTWNVEVFVSVIQDLAPHFNWRDVVLQ
LDHSGFMVANKKGLRLLVQGLIRGLQEVFPVEFVYRPWKNTEGQLSFIKQALRNPDVFCF
GDYPCHTVVIDILKAAPDDENRDIGTWKSLDLVETLLRLSEAGYYQQVSELFKFPIQNCP
DMLVLALLQITPTWNTLKQELISTLMPIFLGNHPNSAVVLHYAWHCQGHSSTIRTLIMHS
MAEWYMRGEQHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWL
SDKIREHGEPFIQTSVNFLKRRCPQLMGGPAKDEQLPQAKSQMLPTDTIATMLSCLQHCA
SQVSQELSEAILTMVANASMILNKARQAPPVPKTNLPPTLLNQPTTQSNLLDSLDNANTL
GIPKSWGMSAVNSGFPQNLTSLSTTATPGSPAKGAGFQPISQPSGFGAMQNITNQLQSLS
MSNPMGVPPRNPGVNTLGTISSQAVIKQQQQQQVQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQLRAGGMSQVSGEMSTIFPDMSQQFTREVEDEANSYFQRIYNQHPHPTMSIDDVL
DMLKRFKDSPNRREKDVYECMLRNLFEEYRFFPQYPERELHITAVLFGGIIEKGLATYMA
LGIALRYVLEALKKQLNSKMYYFGIAALDRFKTRLKDYPQYCQHLAAIPHFQQFPQHLIE
FVEYGARSQEPPVMPSISRTLTPTAVGGVSFTGTAPTVTPTPTSAAVTSVEGPIPPVLTP
AAAPAPSPAAVTTTTTATTTVVSTGTTKPSSLPKPSIASATNIDTLLAGQGNEESSIPPE
SVQDKVFFIFNNLSLANMNQKAEELRKEITEDYYAWSAQYLVMKRASIEPNFHTLYANFL
DALQIPDITQMVIRETFRNIKVLLRSDKGDANFSDRTLLKNLGHWLGMLTLAKNKPILQI
DIDLKALLYEAYHKGARELLYVVPFTAKVLESCAKSKVFRPPNPWTIGIMNVLAELHQEP
DLKLNLKFEIEVLCKTLTLDLNELNPSTYLKDTSRISTTEPQLSNMVKNLPPPPMPTPQP
EQPLVQLTAPVPTPPVSTTSVTSTVTTTTPNMPPRPQFAFDEIVTANLNSIGAHIVTSDQ
IPLFQGNPNLKQMVKMALEKSIQELLPPVVERTIKITLQTCEQIIKKDFALDPEENRMRA
AAHHMVRNMTAGLALITSREPLYLSINNNLKSAFMATLRINEGATSAQKEMIEQAAQLVA
QENTELACVFIQKTAVEKAIPEIDKRLATEFDLRKHARSEGRRYCDPVILTYQAERMPEQ
IRLKVGGVTAGQIAVYEEFAQNIPGFQPTNDPSLPPGVPKPVPTYSIDDLTQILDRIRQD
MEQYMQQLMGIPTSNPLMVQLHSLLEAVLLARNNREVVTSIALLQKAVEGLLDHYTFSQL
SSDQDLLVRFRNCNLMVLKSLQEQRAYGPQWTNKQVTRCLIEVGGDNKYNADAVDCLIRS
GLVSMQQYDLYLVQLMENGLNYVGVMFAMQLVQRYCVDDKANSPVTEVDFANTIEALTQV
NSRNQRPPEGLAQMLEGLHPPVDFGLLERAIGGPTSMMQSGISQARELDDPPGLHEKTEF
LLREWVNMYHSPAAGRDSTKAFTAFVQQMHQQGILKTDDLITRFFRLCTEMCVDLCYRAL
GEQSQNPALVRAKCFHTLDAFVRLIALLIKHSGDTANTVTKINLLNKVLGIVAGVLLQDH
AVRHSEFQQLPYHRIFIMLFIELNAPEHILENINFQVLTAFCNTFHVLRPAKAPGFAYAW
LELLSHRVFIGRLLALTPQQKGWGMYAQLLLDLFKFLTPFLRNAELTKPTQLLYKGTLRV
LLVLLHDFPEFLCDYHYAFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLADI
AHPPRILTNFAKMIEPASFKKDLDSYLKTRSPVTFLSDLRSNLQLNEPGMRYNIPLMNAL
VLYVGTQSIQHIHSKGLTPSMSTIAHSAHMDIFQNLGVDLDTEGRYLFLTSISNQLRYPN
SHTYYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFW
NHEFVHCAPEIEKLFESVARSCMQPKSGQSLRETETNEIH
NT seq
7323 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcatttgccttggcagaaataagctattcagtgtccaattta
acaaagaagaatttcaaatcgagcgttggagaaataagtcatcttgttctgcaacacgga
gctgaagcagataggcatttatttcggtgccttttctctcatgtagacttcagcggtgat
ggtagaagcagcgggaaagactttcaccagacacagtttttgatacaggagtttggttct
ctgctgagcaaaccaaattttgtgtcaactttgtgttacgccatcgataatccattacac
catcaaaagtgtttacgtccatcagtacacctcttcccacaaatcagtcgggtcctgaag
ctgactcgtgtacaggaagttgtgtttggattagcattgataaactcttcgagtcctgag
actcgtcctcacgccatacaatttgtcaaacagaagttgccagatctcatcagatcttat
gttgatgcagtagactcaggattgcgtcaggaaggcggtttgcaggacgtggacgttgag
atactccaccttctgcttaaccaaatccagagcaacaaggacaactttggacttggtgcg
gaacaaagggaagctttctataggacactcagaaaagattttcctcacaatcgtgttccg
gtcatattaggaccgttgctttatcctgagtcagaagaccttgcaatatcaaagctctcg
gatacaacaaacatgccgaaatctgtgctggatgcatctttggcagacatggttctggag
gctggatacagctgtacaataagtgttgaagaatgtcgtggaaagctccttcagttcggt
atcagggagataacgccagcatctgtggcaaaagtgttgggaatgatggcaagaacacca
tcagggttatcagaagcaggacacaaccaggctcagatgaatgctgcaccaggcagtggc
tggcctgacatgggagagaaggcagacaagctcggtgttaacacttggaatgtggaagtg
ttcgtcagcgtcattcaggatctggctccccacttcaactggagagacgtagttctacaa
cttgaccactcaggcttcatggtggccaacaagaaagggctgcgactactggtgcagggg
ctgatccgaggactgcaagaagtgtttcctgtcgagtttgtgtatcgaccatggaaaaac
acagagggacagttatcattcatcaagcaagcattgcgtaacccagatgtgttctgtttc
ggagattacccttgtcacacagtagtcatagatatcctgaaggctgctccagatgatgag
aatcgcgatatcggaacatggaaatcacttgaccttgtggaaaccttgctgcgtctatct
gaggcaggatattaccagcaagtgtcagaactcttcaagttccccatccagaactgtccc
gacatgcttgtactcgctctgctgcaaattacgccaacatggaacaccctgaaacaggag
ctgatatccacgctgatgccaatcttcttaggaaatcatccaaactcagcagtggttcta
cattatgcttggcactgccagggccactccagcaccatccgaaccctgatcatgcactca
atggcagaatggtacatgcgtggagaacaacatgatcagacacgcctctccaggatactg
gatgttgcacaagatctcaaggctctgtcaatgctgctgaatgctacaccattcgccttt
gtaattgacttggcttgtctggcttcacgacgtgaatatcttaagttggacaaatggctg
tctgacaaaatcagagaacatggggagccattcatacagacatcagtgaacttcttgaag
cgacgctgtccacagctgatgggtggtcctgccaaagatgaacagctgccacaggctaag
agccagatgttgcccacggataccatagccactatgttgtcatgtttacagcattgtgcc
agccaagtgtcccaagagttatctgaggccattctgactatggtggccaatgccagtatg
atcctgaacaaagccagacaagctccaccggtaccaaaaaccaacctaccaccaactctg
cttaaccaaccaaccacacagtcgaacctgctggacagtttggacaatgcaaacacacta
ggaattcctaaatcatggggtatgtcggcagtgaactcgggcttccctcagaacctcacc
tctctcagcaccacagccacacccggatctccggccaagggagctggcttccaacctatc
tcgcaacccagtggtttcggggccatgcagaacatcacaaatcagctacaaagtctatcc
atgtccaaccccatgggagtaccacccaggaatccaggtgtaaacacgttaggaactata
agttcccaggcagtgatcaaacaacaacaacagcaacaagttcagcagcagcaacaacaa
caacagcagcaacagcagcagcagcaacaacaacaacaacagcagcagcagcagcagcag
caacaacaacaacagcagctacgtgctggaggaatgtcccaggttagtggtgaaatgtca
accattttccccgacatgtcgcagcaattcacacgggaggtggaggatgaggctaactcg
tatttccagaggatctacaatcagcatccacaccccactatgtctattgatgacgtgctg
gacatgctgaaacgcttcaaggactcgcctaacaggagagagaaggatgtgtatgagtgt
atgctacgtaatttatttgaagagtacagattcttcccccagtatccagagagagagctt
catattactgcagtgttgtttggaggaatcattgaaaagggactagcaacttacatggca
cttggtattgccctgcggtacgtgttggaggccttaaagaagcagctcaattctaaaatg
tactactttggaattgctgctcttgatcgcttcaaaacaaggttgaaggactatccccag
tattgtcaacatctggctgccattccccatttccagcagtttccacaacatcttattgag
tttgtggaatatggggcaagatcacaagaacctccagttatgccttccatatcacgaact
ttgaccccaacagcagttggtggggtgtcatttacagggacagcacccacagtgactcct
accccgacaagtgctgcggtgacatctgtggaagggccaataccaccggtgctaacccct
gctgcggccccagccccctcccctgctgctgtcaccacaacaaccacggccacaacaaca
gttgttagcacagggaccacgaaacccagcagcttacctaagccgtccatcgcgagtgct
acaaacatcgacaccctcctggcaggtcagggtaatgaggaatcctcgataccaccagaa
tctgttcaggacaaagtcttcttcattttcaacaacctgtcattggccaatatgaaccag
aaggcggaggagttacggaaggagatcacagaggattactacgcctggtctgcccaatac
ctggtgatgaagagagccagcattgaacccaattttcacaccctgtatgccaacttccta
gatgcactgcagatccctgacatcactcaaatggtcattagggagacatttaggaacatc
aaggttttgttacgaagtgacaaaggtgatgccaacttctccgacagaactctgctgaag
aaccttggccattggcttggcatgttgacactggccaaaaacaagcccattctgcagata
gacatagatctgaaggctctgttgtatgaggcctaccacaaaggagccagagaattactg
tatgttgtacctttcacagccaaggtgctggagtcgtgtgccaagagcaaggtgttccgg
ccaccaaatccatggacgattggaataatgaatgttctagcagaacttcaccaggagccg
gatctgaaactcaaccttaagtttgagatagaagtgctatgtaaaacattgacactggat
cttaatgagttgaaccctagtacatatctgaaggacacctcccgtatatctacaactgag
ccccagttgtccaacatggttaagaacctgcctcctccacccatgcccactccacagcct
gagcagcccttagtgcagctcacagctccagttcccacgcctccagtttctacaacatca
gtcacctccactgtcaccactacaacgcctaacatgccacccaggccacagtttgctttt
gatgaaattgtgactgcaaatctcaacagtattggagctcacattgtgacaagcgatcag
attccattattccaaggaaacccgaatcttaaacagatggtgaagatggcattagaaaag
tccatccaggagcttctccctcctgtagtagaacgtaccataaagatcactctacagaca
tgtgaacagatcatcaagaaggactttgcccttgatcctgaggagaaccgaatgcgagca
gcagcccaccacatggtacgcaatatgacagctggtctggccctgattacatcacgagaa
cccctctacctcagtatcaacaacaatctcaagagtgccttcatggccacgctcagaata
aatgagggtgctacctcggcacagaaggagatgatagaacaggcagcccaacttgtggca
caggaaaacacagaactagcctgtgtttttatacagaaaacagcagtggagaaggcaata
cctgaaatagacaagcgactagccacagagtttgatctccgcaagcatgcaaggtcagag
ggtcgaaggtactgtgaccctgtcattctgacctaccaggctgaacgtatgccagaacaa
atccgactcaaggttggtggtgtgactgctggacagatcgctgtgtatgaagaatttgcc
cagaacatcccaggttttcagcctacaaacgatccatcgcttcctcctggagtaccaaaa
ccagtaccaacatattccattgatgacctgacccagatcctggaccgtatccgacaggac
atggagcagtatatgcagcagttgatggggatacccaccagtaacccactgatggtacaa
ctacacagcctgttggaggctgtcctgctggcccgtaacaatcgagaggtggtcacctct
attgcccttctacagaaggcagtagaaggcttgctggatcactacaccttctcacaactg
tccagcgaccaggacctattggtgcgtttcaggaactgtaacttaatggtgctgaagagt
ttgcaggaacagagggcctatggtcctcagtggaccaataaacaggttaccagatgcctg
attgaggttggaggagacaacaagtacaatgctgatgcagtcgactgtctgatacggtca
ggcttggtcagcatgcagcagtacgacctatacctggtccaactcatggagaacggtctc
aactatgtaggagttatgtttgccatgcagctggtgcagcgctactgtgttgatgataag
gccaatagtcctgtcacagaggttgactttgccaataccattgaggccctgacacaggtg
aattcccgtaaccagaggcctcctgaggggctggcccagatgctggaaggcctacacccc
ccagtggactttggcctgttggagcgtgctataggaggacccacctcaatgatgcagtct
ggaatatcccaggcaagggaactagatgacccaccaggtctccatgaaaagacagagttc
ctgcttagggagtgggtcaacatgtatcactctcccgctgctggccgtgacagtaccaaa
gctttcacagcatttgtgcaacagatgcaccaacagggaatcctcaagacagatgatctc
ataacccggttcttccgcctctgtacagagatgtgtgtggacctgtgttatcgcgctctg
ggcgaacagtctcagaaccccgctctagtccgcgccaagtgctttcatacacttgatgct
tttgtcagactcattgccctcctcatcaaacattcaggtgacactgccaacacggtcacc
aagatcaaccttctcaataaggtgttgggtatcgtggctggcgttctccttcaggaccat
gctgtccgccactcagagtttcagcagctgccatatcatcgcatcttcatcatgctcttc
atcgagctgaatgctcccgaacacatcctcgagaacataaacttccaagtgctcactgca
ttctgcaacacattccatgtgctaaggccagctaaagctccagggtttgcatatgcctgg
ctggagctgctctcacaccgagtgtttattgggcgattgctggcactgacaccccaacaa
aagggctggggaatgtatgctcagttgctgctcgacttgttcaagttcttgaccccgttc
ttacgcaatgctgagctaaccaagccaactcaactcctgtacaagggtacattgcgggtc
ctgttagtgctactccatgactttcccgagttcctgtgtgactaccattatgccttctgt
gatgtcatcccacccaactgtattcagatgcgcaatcttattctgagtgcatttccacgc
aacatgcgactacctgaccctttcacaccaaatctcaaggtggacatgttggccgacatt
gcacatccaccccgcatacttaccaactttgccaagatgattgagccagcctcttttaaa
aaggacttggactcctacctgaagacaaggtctccggtcaccttcctgtctgacctgcgc
agtaatctacagctgaatgagcctggtatgaggtacaacatcccactaatgaacgcgctg
gtgctgtatgtcggaacccagtccatccaacatatccatagcaagggcctcactcccagt
atgtccaccattgcacactccgctcacatggatatcttccagaaccttggtgttgatctc
gatacagagggtcggtacctgttcctgacgtccatctctaaccagctgcgataccctaac
agccacacatactacttcagctgtacactactctacctgttcgccgaggccaacacagag
gccatacaggaacaaatcacaagggtgcttcttgaacggttgatcgtcaacaggcctcat
ccatggggactactcattacattcattgagctcatcaaaaatcctcagttcaagttctgg
aatcatgaatttgttcattgtgctccagaaatagagaagttgtttgagtcagttgcccgt
tcatgtatgcagcctaaatcaggacagagtctcagagagactgaaacaaacgaaattcac
tga
DBGET
integrated database retrieval system
