Pseudoalteromonas maricaloris DSM 15914: R5H13_21400
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Entry
R5H13_21400 CDS
T09524
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5H13_21400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaz03019
]
R5H13_21400
03400 DNA repair and recombination proteins [BR:
pmaz03400
]
R5H13_21400
Enzymes [BR:
pmaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R5H13_21400
Messenger RNA biogenesis [BR:
pmaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R5H13_21400
DNA repair and recombination proteins [BR:
pmaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R5H13_21400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SNF2-rel_dom
SWI2_SNF2
DUF6395
Cas3-like_C_2
TniB
Flavodoxin_1
Motif
Other DBs
NCBI-ProteinID:
WOX31497
UniProt:
A0A8I2KM05
LinkDB
All DBs
Position
2:complement(536782..538716)
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AA seq
644 aa
AA seq
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MTQQQQLFQTLQSTFGHTTLRSGQSEVIESILQGQSAIAIFATGAGKSLCYQLPAILKQG
MCLVVSPLLALMHEQRDYLQSKGVATACLDSTQSKEETLRIENAVRDNALKVLFISVERL
NSQKARTLLSQSNISFLVIDEAHCISEWGHNFRPDYLKVAKYRHELGINQVLLLTATATN
KVARDMAGKFDVSDQNIIRTGFYRKNLFLSAAHISESQKDEYLLAFLKKAKGAGIVYVTQ
QKQAEEVAKMITACGFPAEAFHASLQSEKKAQIQADFLAKANLIVVATIAFGMGVDKPDV
RWVLHYDMPKSIEGYSQEVGRAGRDGENAHCVALINNEKIATLENFVYASALERESLTLL
FNELFGDPATDYHLNEYDLAYKTNINQLVLKTLIVQLELQGYLQVNYSYFAELSIAFSQD
KDKILAKYSPERQLFLTQLFSCFEFKKKWGLLSHQALSEQNIPQAKAQEVVEYLQNQQLI
DVKVAKYTSVYSKPIQQVNINELVESFYQQSQIKEQGELARLRHLLKFFQLTSCYHKALA
SYFGDMHAPEQCGHCGVCGGKHLIVNAQGSRELDIETTRNILRDASQFASQRGVNFSTHL
KTLFLLGLNCPYFTKYKFRQLEGFGSLSGVKYEQVKAVIMERAL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgactcaacagcagcaactctttcaaacactacaaagtacatttggacatacgacactt
cgctcggggcaatcggaagtcattgaatctatacttcaaggccaaagtgcaatcgctatt
tttgcaactggtgcaggcaagtcgttgtgttatcagttaccagcaatattgaagcaaggg
atgtgcttagtcgtttcaccactattagcactaatgcacgagcaacgagattacctacaa
agtaaaggcgttgcgactgcttgtcttgacagtactcaaagcaaagaggaaacgttgcgc
atagaaaatgcggtgcgagacaatgcacttaaagtcctctttatatcagtcgagcggctt
aatagccaaaaagcacgtaccttgttatcacaaagcaatatctcttttcttgtcattgat
gaggcgcattgtatttctgagtggggacataatttcaggccagattacctaaaagtggcc
aaatatcgccatgaacttggtatcaaccaagtgctattactcaccgcgacagcaacaaat
aaagttgcacgcgatatggcgggtaaattcgatgtatccgatcaaaatatcattagaacg
ggattttacaggaagaatctattcttaagtgcggcgcatattagcgaatctcaaaaagac
gaatatttactcgcctttttaaaaaaggcaaaaggcgctggtatcgtttatgtcacgcag
caaaagcaagcagaagaagtagcaaaaatgataactgcttgtggctttcctgcagaagct
tttcatgcatcattgcagagcgagaaaaaggcccaaattcaagcagattttctagcgaaa
gctaatcttatcgttgtagctaccattgcatttggtatgggtgtagacaaacccgatgtt
cgctgggtactacattatgatatgccaaaatctattgagggatatagccaagaggtgggt
agggcaggcagagatggcgagaatgcacattgcgttgctttaattaataatgaaaaaatt
gccacattagagaacttcgtttatgccagtgcattagagcgagagtcattaacgctgctt
tttaatgaacttttcggtgatccagctacagattatcacctcaatgaatacgatctcgcc
tataaaaccaatattaatcaattggtactaaaaacacttattgtccagctcgaactgcaa
ggttacttacaagtaaactacagctattttgcggagctaagcatcgcattcagccaagac
aaagataaaatattagccaagtactcgcctgagcggcaactgtttttgactcagctattc
tcgtgttttgaattcaaaaagaaatggggattactttcacatcaagcattaagcgagcaa
aacatcccacaggctaaagcccaagaagtcgttgagtatttgcaaaaccaacaattgatt
gacgtaaaagtcgctaaatatacgtcggtttattcaaagcctatccaacaagttaacatt
aatgaactggttgagtctttctaccagcaatcacaaattaaagagcaaggcgaacttgca
cggctaagacatttactcaaatttttccagctaacttcatgctatcacaaagcgcttgcc
agctacttcggcgatatgcacgcaccagaacaatgcggccactgcggggtctgcggcggt
aagcatttgatcgtcaatgcacaagggagccgggaattagatattgaaacaacacgaaat
attttaagagacgcttcgcagtttgcatcgcaacgcggcgtaaatttttctactcacctc
aaaacgttgtttttgctaggcttaaattgcccctattttactaaatataaattcagacaa
cttgaaggatttggcagcttgtccggtgtaaagtatgaacaggtaaaagcagtgatcatg
gagcgcgcattataa
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