Polymorphobacter megasporae: KTC28_11530
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Entry
KTC28_11530 CDS
T08573
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pmea
Polymorphobacter megasporae
Pathway
pmea03410
Base excision repair
pmea03430
Mismatch repair
pmea03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KTC28_11530 (recJ)
03430 Mismatch repair
KTC28_11530 (recJ)
03440 Homologous recombination
KTC28_11530 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmea03400
]
KTC28_11530 (recJ)
DNA repair and recombination proteins [BR:
pmea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KTC28_11530 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KTC28_11530 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KTC28_11530 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UAJ08988
LinkDB
All DBs
Position
complement(2458674..2460446)
Genome browser
AA seq
590 aa
AA seq
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MSHVFNVTASVLGQPWQWRGGIAPGSGAAGGIDDLVEQLFRARGAAAVDLDRLRSAKLRD
WLPDPSIFRDMDAAAARIAAAIRAAEPVVVFGDYDVDGATSAALLIRLIRDCGGIASAYI
PDRLLEGYGPSPAAMVALAGTGATLIVTVDCGTQGFDALAAAKAAGVEVIVVDHHQASTA
LPPAVAVVNPNRLDETEGAAFGHLAAVGMAFIVAVAVVRTLRADGWFIDRTAPNLLDLLD
LVALGTVADVVPLTGLNRAFVAQGLKVMGARRNLGLAALSAVAGIERAPLARDLGFALGP
RINAGGRVGKSDLGVRLLTTLDPDEAATLAAELDRLNVERRAIEAAVTDEAALLTDRTGN
AAVAVIASGGWHPGVIGIVASRLKDKLKRPVIVIALEAGPDGGMIGKGSGRSVPGVDLGG
AILAAKDMGLLIAGGGHAMAAGLTIDAARIDELAVFLDERLGGDVGRSSGGRALFVDAAL
SPRGVCIELTEVLDVGGPYGQGWPAPRVASGPWRVAKVDIVGDNHVRAILTGGDGARIKA
MAFRSGDTPLGLALASAAGRWCFVSGRVQRDDWGRTPAAELHLDDLAWVD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatgtcttcaacgtcaccgcctcggtcctcggccagccgtggcagtggcgtggc
ggaattgcgccgggcagcggtgcggcaggcgggatcgacgacctcgtcgagcaattgttt
cgcgcacgcggcgcggcggcggtcgacctcgaccggctccgctcggcgaaactgcgcgac
tggctgcccgacccgtcgatcttccgcgacatggacgccgccgccgcgcgcatcgccgcc
gcaatccgagccgccgaaccggtcgtggtcttcggcgattacgacgtcgacggtgcgacg
agcgcagcgctgctgatccggttgatccgtgactgcggcgggatcgccagcgcatacatc
cccgaccggctgctcgaaggctatggcccctcgcccgccgcgatggtcgcgctggcagga
actggcgcgacgctgatcgtcaccgtcgattgtgggacgcaagggtttgacgcgctcgct
gccgccaaagccgccggggtcgaggtgatcgtcgtcgaccaccatcaggcgtcgaccgcg
ctgccccccgccgtcgccgtggtcaacccgaaccgcctcgacgagaccgagggcgcggcg
ttcggccatctcgcggcggtcggcatggcgttcatcgtcgcggtcgcggtggtgcggacg
ttgcgcgccgacggttggttcatcgaccgcaccgcacccaacctgctcgacctgctcgat
ctcgtcgcgctcggtactgtcgccgacgtcgtcccgctgacgggactcaaccgcgctttc
gtcgcgcaggggctgaaggtcatgggagcgcgccgcaatctcggtctcgcggctttgtct
gcggtcgctggaatcgagcgcgcgccgctcgcccgcgatctcggctttgcgctcgggccg
cggatcaatgccggggggcgggtcggcaagtccgacctcggcgtccggctgctgacgacg
ctcgatcccgacgaagccgccaccctcgccgccgaactcgaccgccttaatgtcgaacgc
cgcgcgatcgaagcggcggtgaccgacgaggcggcgctgctgaccgaccgcaccggcaac
gccgcggtcgcggtgatcgcgagcggtggctggcaccccggggtcatcggcatcgtcgcc
agccgcctcaaggacaagctgaagcgcccggtgatcgtcatcgcgctcgaggccggtccc
gacggcggcatgatcggcaagggatcggggcggtcggtgcccggggtcgacctcggcggc
gcgatccttgcggcgaaggacatggggttgctgatcgccggcggcggccacgcgatggcg
gcggggctgacgatcgacgcggcgcggatcgacgagctcgcggtgttcctcgacgaacga
cttggcggcgacgttggccggtcgagcggaggcagggcgctgttcgtcgacgccgcgctc
agcccgcgtggggtgtgcatcgaactgaccgaagtcctcgatgttggcggaccgtacggc
cagggctggcccgcgccgcgtgtcgccagcggcccatggcgcgtcgccaaggtcgacatc
gtcggcgacaaccacgtccgcgccatcctgaccggcggcgacggcgcgcggatcaaggcg
atggcgttccgctcgggcgacaccccactcggtctggccctcgcgagcgccgccggacgc
tggtgcttcgtctccggccgcgtccagcgcgacgactggggccgcacccccgcggccgaa
ctccaccttgacgatctggcatgggttgactag
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