Paraglaciecola mesophila: FX988_01980
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Entry
FX988_01980 CDS
T06389
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FX988_01980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmes03021
]
FX988_01980
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_01980
Enzymes [BR:
pmes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FX988_01980
Transcription machinery [BR:
pmes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FX988_01980
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FX988_01980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
QHJ11745
UniProt:
A0A857JIA1
LinkDB
All DBs
Position
complement(2319750..2323778)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIDLDVDGQHGLEAAFRSVFPIK
SYSGNAELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDREAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPATIMLRALEIPTEEILGMFFEKNQVRIDGNRFMSD
IVPDRLRGETAQFDILDSDGNVLVEAGRRISARHTRALEKAGIVELEVPAEYLIGRVYAC
DYVDQETGELVVAANDILTLENVLALKEAGYTTFETLYINELDHGAYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFQNLFFSDDRYDLSSVGRMKFNRRLGRETSIGAGT
LDKDDIVDVMKQLITIRDGKDDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLASFARTNDFGFLETPYRKIVDGVV
TDEIDYLSAIEEGQFSIAQANVALDENGRLADDLIPCRHRGETTLKESSEITYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLIADKPLVGTGMEKTVAVDSGVTVVAK
RGGRVDYVDASRIVIKVNEEETVAGEAGIDIYNLTKYTRSNQNTCINQRPTCNVGEPIVA
GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILISERVAMEDRFTTIHIQELSCV
ARDTKLGPEEISSDIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVRGTVIDVQVFTRDGVEKDKRALEIEGMQLRQVKKD
LSDEFNILADGIFARAKNLLLKSGIEESRLESAQREKWFDLTLTDEDAQTELDQIAEQFV
EIKADFDKKFEIKRRKITQGDDLQPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISTI
KPVEDMPYDVNGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGIGVKIDRMLKEHEEMA
KLRGFLKEVYGAGTTDQEVDLDSFSDDEITRLADNLRKGVPMATPVFDGATEAEIKHMLT
LADLPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEQ
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaataccgtatctactttcaatccagctagattcttttaaaaagtttattgac
cttgacgtcgatggtcagcatggactggaagcagcatttcgatcagttttcccaataaaa
agttactctggtaacgcagaattacagtacgtaagttaccgtttaggtgagcccgtattt
gacgtaaaagaatgtcaaatccgtggtgttaccttttcagcgcctttgcgtgttaagttg
cgtttagtgttgttcgatcgtgaagcagcaccaggcacagtaaaagacatcaaagagcaa
gaagtttacatgggcgaaattccgctcatgactgaaaatggaactttcgtcattaacggt
actgagcgagtcatcgtatctcagttacaccgttcgccaggcgtattctttgatcacgat
aaaggtaaaactcactcatcaggtaaagtgttatataacgcgcgcgttattccttaccgt
ggttcgtggttagactttgaatttgaccctaaagataacctttatgttcgtatcgataga
cgccgcaaattgccagcgactattatgctacgtgcattagaaataccgactgaagaaata
cttggaatgttctttgagaagaaccaagtacgtattgacggtaatcgttttatgtctgat
atcgtgccagatcgccttcgtggtgaaactgcgcaattcgatattttagactctgatggc
aatgtgcttgtagaagcaggccgtcgtatttcagctcgtcatacccgcgcattagaaaaa
gccggtattgttgaactggaagtccctgcagaataccttattggccgtgtttacgcctgc
gattacgtggatcaggaaacaggcgaattagtggttgctgccaacgatatattgacgctt
gaaaacgtgttggccctaaaagaagctggatatacaacgtttgaaactttgtacatcaat
gagcttgatcacggtgcctatatctcagataccttgcgcattgatagctcaactaaccgc
ttagaagccttggttgaaatttatcgtatgatgcgtcctggtgagccgcctactaaggat
gctgctgagacattgttccagaacttgttcttctcagacgatcgttatgatttatcgtct
gttggacgtatgaagttcaaccgtcgtttaggtcgcgagacatcaatcggtgctggtaca
ttagacaaagacgacatcgttgacgtaatgaagcaactgatcactattcgtgacggtaaa
gacgacgtcgatgatatcgatcacttgggtaaccgtcgtattcgctctgttggcgaaatg
gctgaaaaccaattccgtgttggtctagtgcgtgttgagcgtgccgttaaggaacgttta
agcttaggcgatttagatgcggttatgcctcaagacttgattaacgctaagcctatttcg
gcagcagtgaaagagttctttggttcaagccagttgtcacagtttatggatcagaacaac
ccgttatctgaagtaacccataaacgtcgtatttcagccttaggcccaggcggtctaaca
cgtgagcgtgcgggctttgaagtacgagatgtacacccgactcactatggtcgtgtatgc
ccaatcgaaacacctgagggaccaaacatcggtttgatcaactcattggcgagctttgct
cgtaccaatgattttggtttccttgaaacaccataccgtaaaatcgttgacggtgtagtg
actgacgaaattgattacttatcagcaatcgaagaaggtcaattctcaatcgcacaggca
aacgttgcgcttgatgagaacggtcgccttgctgatgatttgatcccttgtcgtcaccgt
ggtgaaacgacattgaaagaaagctctgagatcacctacatggatgtatctccgcagcag
atcgtttcaatcgctgccagcattatcccattcctagaacacgatgatgctaaccgagct
ttgatgggtgcgaacatgcaacgtcaagcagtaccaacgcttatcgctgacaagcctcta
gttggtaccggtatggagaaaacagttgccgttgattctggcgtgactgttgttgctaaa
cgtggtggacgagtcgactacgtagatgcaagccgtattgttataaaagttaatgaagaa
gaaactgttgccggcgaagcgggcatcgatatctacaacttaaccaagtacacccgttct
aaccagaatacctgtatcaaccagcgcccaacatgtaacgttggtgagccgattgttgct
ggcgacgtactggctgacggcccatctacagatttaggtgagctagcactagggcaaaat
atgcgtatcgcattcatgccttggaacggttacaacttcgaagattcaatcttgatctct
gagcgcgttgctatggaagatcgtttcaccacaattcatattcaagaattgagctgtgtg
gcacgtgataccaagttagggcctgaagaaatcagttctgatattccgaacgtaggcgaa
tctgcgctaggtaaattggatgaatcaggtgttgtttacatcggtgctgaagtgaaaggt
ggcgacatcttagtgggtaaagttacgcctaaaggtgaaacgcaactcaccccagaagag
aaacttttacgagctatcttcggtgaaaaagcatcagacgttaaagatacttcactgcgc
gtaccgaacagcgttcgcggtactgtgattgacgtacaggtatttactcgtgatggcgta
gaaaaagacaagcgtgcacttgaaattgaaggcatgcagttacgtcaagtgaagaaagat
ttatcagacgaattcaatattcttgctgatggtatcttcgctcgtgctaaaaacttgttg
cttaaatcaggtattgaagagtcacgtttagagtctgctcagcgggaaaaatggttcgac
ctgacgctaacagatgaagatgctcaaactgagcttgatcaaatcgctgagcagtttgtt
gaaatcaaagctgacttcgataagaagtttgaaatcaagcgacgcaagatcactcaaggc
gatgatcttcaaccaggcgtgcttaaaatcgttaaggtttacttggccgttaaacgtcaa
attcaacctggtgataagatggctggtcgtcacggtaacaaaggtgttatttcaaccatt
aaaccagttgaagatatgccttacgatgtaaacggtacgccggtagacatcgtattgaac
ccgttgggtgtaccgtcacgtatgaacatcggtcagatccttgagactcaccttggtatg
gctgctcacggtattggtgtgaaaatcgatcgcatgctcaaagagcatgaagagatggct
aagctacgtggcttcctcaaagaagtctacggtgcaggcacaactgaccaagaagtggat
cttgatagcttcagcgatgacgaaattacccgtcttgcggataacttgcgtaaaggtgtg
cctatggcaacaccagtatttgatggtgctactgaagctgaaatcaaacatatgcttacg
cttgctgatcttcctgaaagtggacaaatcgctttgtttgacggccgtacaggacgtgaa
tttgaacgtccagttactgtaggctacatgtatatgttgaaactgaatcacttggttgat
gacaaaatgcatgctcgttcaactggttcgtacagcttggttacacagcagccgttgggt
ggtaaagctcaattcggtggtcagcgcttcggtgagatggaagtatgggcacttgaagca
tacggtgcagcttataccttgcaagaaatgttgacagtgaaatctgatgacgtgaatggt
cgtactaagatgtacaaaaacatcgtcgacggcgaccatcgcatggaacctggtatgcct
gaatcattcaacgtattgttgaaagagattcgctcactgggtatcaacatcgagctggaa
gaacaataa
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