Prochlorococcus marinus MIT 9211: P9211_09271
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Entry
P9211_09271 CDS
T00616
Symbol
mfd
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmj
Prochlorococcus marinus MIT 9211
Pathway
pmj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P9211_09271 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmj03400
]
P9211_09271 (mfd)
Enzymes [BR:
pmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P9211_09271 (mfd)
DNA repair and recombination proteins [BR:
pmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P9211_09271 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RMI1_N_N
RecG_dom3_C
DUF3127
Motif
Other DBs
NCBI-ProteinID:
ABX08858
CyanoBase:
P9211_09271
UniProt:
A9BAJ6
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All DBs
Position
821147..824656
Genome browser
AA seq
1169 aa
AA seq
DB search
MSLEPIIDKLKESSLTSQLIERIQRNNRLILTGGSKTAKTIISTTISKAEKLPLIVIVPT
LEETTRWYSILNNFSWDSLYIYPTSENSPYESIPPTTEILWGQLQVLTELCSNDTNNIAI
VTTERALQPHLPPKDSFLTSCLSLVKENIFDLDKLAINLTNLGYSKTTTTEEEGQWSRRG
DILDIYPVNYESPIRLEFYGDNIDKIKEFDPVSQRSLDEINQVIISPVNFDILIANKLSS
FTPEILAKYFDADSIDKLKNNIIPSGIRRYLGLAWTSPSSLIDFIDNSSLIITDEPNQCN
SHSTAWTEHVSETYHQLETNLELNDNNLALPPNNLHSTFTTNYDLLNGFYGLDTTDFIDQ
YNRENIFDISSKQILTYPNQFGRLSEMLKKYQNDKFKIFIYSAQPSRTSSLLNEHDCISV
FVENSKDSLRIKTLLDQNTPVALRSSSNFDLEGINFLPWKILLLTDKEFYGQQLVSHSGY
VRRRKRSASKSIDHNKLRTGDYVVHRNHGIGKFIKIEKFVISQESRDYLLVQYQDGTLRV
AADQLGSLGRYRSSSDKSPRIGKLGGTAWLNAKEKARKSINKVAIDLIRLYAERNKTEGY
SFPPDAPWQSELEDAFQYEPTHDQLTAIKDVKNDMEKPKPMDRLVCGDVGYGKTEVAIRA
LFKAIISGKQAALLAPTTILSQQHWRTLSDRFAPYPIKIALLNRFKTSREKNAIVEELKS
GTIDLVVGTHLILSNKVCFKDLGLLVVDEEQRFGVKQKERIKQFKKNIDVLTLTATPIPR
TLYMSLSGVREMSLITTPPPLRRAIKTHLIPYEEEAIRSAICQEIDRGGQIFYVVPRIEG
ITDIATKLSNMIPKIRILIAHGQMDEGELESSMIAFNDWEADLMLCTTIVESGLDIPRVN
TILIEDAQQFGLSQLYQLRGRVGRSGVQAHAWLLYPSNTTINDKAKQRLQAIQEFSQLGS
GYQLSMRDMEIRGVGNLIGLQQSGQMEAIGFDMYMEMLQECISDLEGHEIPKVDETLIDL
PINAFIPGNWIVDNQEKISAYKAATDCHTSGKLIELGLAWSDRYGALPKPVSSLMQVMQI
KLVGKSLGFSRIRQIKPNIILETKMKESTFKVLRNGIDKSLHSRILYKKGNSSSEVLLRG
LANQPIEKQLDILFEWLSKMKDATTNLEL
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtcattagaaccaataattgacaaattaaaagaatcgtctttaacttctcaattaata
gaacggatacaacgaaataacagattaatcttaacgggaggttcaaaaactgctaaaact
attatatcaaccacaatttcaaaagctgagaaactaccactaatagtcattgttccaaca
ttagaagaaacaacaagatggtattcaattctaaataatttctcttgggattcactttat
atatatccaacatcagaaaattccccatatgaatctataccaccgacaactgagatatta
tggggacaattacaagttttgactgagctttgctctaatgatactaataacatcgccata
gttacaacagaaagagctcttcaaccacatttacctccaaaggactcttttttaacatca
tgcctatctttagttaaggaaaatatatttgatctagataagttagccattaatttaaca
aaccttggatattctaaaacaactactaccgaagaggaaggtcaatggagtcgaagaggc
gatatcttggatatttatccggtcaactatgaatctccaatacggttagaattttatggc
gataatatagataaaataaaggaattcgacccagtttctcaacgttctcttgatgaaata
aatcaggtaataatctcaccggtcaactttgatatattaatagcgaataagctatcttct
ttcactccagaaattctggctaaatattttgacgccgactctatcgataagcttaaaaat
aatataataccttctggtataagacgttatctaggactagcctggacaagcccttcttcc
cttatagattttatagataattcatcactaattattacagatgaaccaaatcaatgtaat
tcccattcaacagcctggacagagcatgtctcagaaacctatcatcaattagaaactaat
ttagagttaaatgataataatttagctcttcctccaaataaccttcattctacttttact
actaattatgacttgctaaatggattttatggcttagatactacagattttattgatcaa
tataatagagagaatatatttgatatttcctccaaacaaattcttacctatccaaatcaa
ttcggaaggttaagtgaaatgctcaagaaatatcaaaatgataagtttaaaatctttatt
tattcagcccaacctagtagaactagctctctgctaaatgaacacgattgtatttcagta
ttcgtagaaaattctaaagatagcttacgcattaagacattactagatcaaaatacacct
gttgctctcagaagttcatcaaactttgatttagaagggattaattttcttccttggaaa
atacttctactaacagataaggaattttatggacaacaacttgtcagtcatagtggttac
gtaaggagaagaaaaagatcagctagtaaaagtattgatcataataaattaagaactggg
gactatgttgtacatagaaatcatggtataggtaaattcattaaaatagaaaaatttgtt
atctctcaagaaagtagagattatttattagtccagtatcaagacggtactttacgtgta
gccgcagatcaacttggttctcttggccgctatagatcatcttctgacaaatcacctagg
attggaaagttaggaggtacagcttggcttaatgcaaaggaaaaagcacgaaaatcaatt
aacaaagttgctatagatttaattaggctttacgcagagaggaataaaactgagggctat
agtttccctcctgatgctccttggcaatctgaacttgaagatgcattccaatatgagcct
actcatgatcaactcactgcaattaaggatgtcaaaaatgatatggaaaaacccaaaccc
atggatagacttgtttgtggcgatgttggctatggaaaaacggaagtagcgattagggct
ctttttaaagctattatatccggaaaacaagcagcattactcgctccaacaactatccta
tctcaacagcattggcgtacgttatctgatcgatttgctccttatccaattaaaattgcg
cttttaaatcgattcaagacttcaagagaaaagaatgcaattgtagaagaactgaaaagc
ggaactatagatttagttgtaggtacccatttaatactttccaacaaggtttgttttaaa
gatttaggtttattagtagttgatgaagagcaacggtttggtgtaaagcaaaaggagcgt
attaaacaatttaaaaaaaatatagatgttcttactcttactgctacaccaattcctagg
actttgtatatgagtctatcgggagttagagaaatgagtcttattactaccccccctcct
ctacgaagggctattaaaactcatttaattccctatgaggaagaagcaatcagaagtgct
atatgccaggagattgatagaggaggtcaaatattttatgtcgtcccacgaattgaaggt
ataactgatattgctacaaaattaagtaatatgattccgaaaataagaatattaatagca
catggtcaaatggatgaaggtgaattagaaagctcaatgatagcttttaatgactgggaa
gcagacttaatgctttgtactacaatagttgagagcggtttagacattcctagagttaat
acaatattaattgaggatgctcagcagtttggcctgtcacagctttatcaattaagagga
agagttggtcgcagtggtgttcaggctcatgcttggctactttatccaagtaatacgaca
attaatgataaagctaagcaacgattacaagcaatccaggaatttagccaattaggaagt
gggtatcaattgtctatgcgtgatatggaaataagaggggttggaaacttaataggccta
cagcagagtggacagatggaagcaattggttttgatatgtatatggaaatgctacaagaa
tgtatttcagatctagaaggacatgaaataccaaaagttgatgaaactcttatagattta
ccaattaacgcatttataccaggtaattggatagttgataaccaagaaaaaatttcagct
tataaggcagcaactgattgccatacatcaggaaaacttattgaattgggtcttgcatgg
tcagacagatatggtgccttgcctaaacctgtctcctcgttaatgcaagtaatgcaaatt
aaactagtcggtaaaagtttaggattttcccgtattcggcagataaaaccaaatattatt
ttagaaactaaaatgaaggaatctacttttaaagttcttaggaatggaatcgataagagc
ttacacagtaggatactatataagaaaggcaattcttcttcggaggtattacttagagga
cttgcgaatcaacccatcgaaaaacagttggatatcctatttgaatggctatccaaaatg
aaggatgctacaacaaacctagaattataa
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