Prochlorococcus marinus MIT 9211: P9211_16071
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Entry
P9211_16071 CDS
T00616
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pmj
Prochlorococcus marinus MIT 9211
Pathway
pmj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P9211_16071 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmj03021
]
P9211_16071 (rpoB)
03400 DNA repair and recombination proteins [BR:
pmj03400
]
P9211_16071 (rpoB)
Enzymes [BR:
pmj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P9211_16071 (rpoB)
Transcription machinery [BR:
pmj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P9211_16071 (rpoB)
DNA repair and recombination proteins [BR:
pmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P9211_16071 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABX09538
UniProt:
A9BCH6
LinkDB
All DBs
Position
complement(1436468..1439758)
Genome browser
AA seq
1096 aa
AA seq
DB search
MSRSAIQVAKTATHLPDLVEVQRASFKWFLEKGLIEELENFSPITDYTGKLELHFIGSEY
RLKRPRHDVEEAKKRDATFASQMYVTCRLINKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDEQDKNGRRTYNASVIPNRGAWLKFETDKNDLLHVRVDKTRK
INAHVLMRAMGLSDNDVIDKLRHPEYYKKSIEAADEEGISSEDQALLELYKKLRPGEPPS
VSGGQQLLQSRFFDPKRYDLGRVGRYKINKKLRLTIPDSVRTLTHEDVLSTIDYLINLEL
DVGGATLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAVKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNDYGFIETPFWKVDKGRVIKEGKPIYLSADLEDE
CRVAPGDVATDKEGMIVADLIPVRYRQDFEKVPPEQVDYVQLSPVQVISVATSLIPFLEH
DDANRALMGSNMQRQAVPLLRPERPLVGTGLETQVARDSGMVPISQVNGTVTYVDANIIV
VTDEEGSEHHHSLQKYQRSNQDTCLNQRPIVHNGDPVIIGQVLADGSACEGGEIALGQNV
LIAYMPWEGYNYEDAILVSERLVKDDLYTSVHIEKYEIEARQTKLGPEEITREIPNIAEE
SLGNLDEMGIIRIGAFVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PSTERGRVVDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKVVPFDEMYGAE
KSYQTVTAYLKEAASLPGKEWVYNPEDPGKLLLRDGRTGEPFDQPVAVGYSHFLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIGVYTDEGKEVDLMQDVNPRRST
PSRPTYESLGSDYQED
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaagcgcgattcaggtcgctaagaccgctacacacctgcctgacttggttgag
gtgcagcgtgcaagctttaagtggtttttggaaaaaggtttaattgaggagcttgagaac
ttctcaccaattactgattacacgggcaagctagagctacattttattggcagtgaatat
cggcttaagcggcctcgccatgatgtggaagaagctaaaaagcgcgatgcaacttttgct
tcccaaatgtatgtaacttgccgtcttattaataaagaaactggagaaataaaagaacaa
gaagtttttattggtgaattgccattaatgactgaaagaggaacatttatcattaatgga
gcagaaagagtaattgttaatcagatagtaagaagccctggcgtatattttaaagatgag
caagataaaaatggccgaagaacttacaatgcaagtgttattcctaatcgcggggcatgg
ttaaagtttgaaacagataagaatgatttacttcatgttcgtgtagataaaactagaaaa
attaatgctcatgttctaatgagagcaatgggtctatcagataatgatgtaatagataaa
ttaagacatcctgaatactataagaaatctattgaagccgctgatgaagaaggtattagc
tccgaggatcaggctttgcttgagctatataaaaagttgcgacctggcgaaccaccctca
gtcagtggtggtcagcaattgcttcagagcaggttctttgacccaaaacgttatgattta
ggacgtgtcggtagatataaaataaacaagaaattacgtttaactatacctgactctgta
agaactctgactcatgaggatgttctttctactattgattatttaattaatcttgagcta
gatgttggtggggcgactttagatgatattgaccatcttggtaatagaagagttagatct
gttggagagttattgcaaaatcaagttcgtgttggtttaaatcgtcttgaaagaataatc
aaggaaagaatgacagtaggtgaaacagattcattgactccagcacaactagtaaacccc
aagcctctagtggctgctgttaaagagttctttggatcaagtcaacttagtcagtttatg
gatcagaccaatcctttggctgaattaactcataaaaggcggatttcggcattaggacca
ggtggtttaactagagaaagagcaggttttgcggtaagagatattcatccttctcattat
ggacgcttgtgtcctattgaaactccagaggggccaaatgctggtctaattaattcctta
gctactcatgccagggttaatgattatggattcattgaaacgcctttctggaaagtagat
aaaggaagagttattaaggagggaaagccaatttatctatctgctgatctagaagatgaa
tgcagagttgcgcctggtgatgttgctacggataaagaaggcatgattgttgctgatttg
attccagttagatataggcaggattttgagaaggttcctcctgagcaagtggattatgtg
caactttcaccagtgcaagtgatttctgtagcgacatctttaattccatttttagaacat
gacgatgcaaacagggctttaatgggttctaatatgcagcgtcaagctgtccctcttctg
cgtccagaacgacctttagttgggacaggtttggaaacacaggttgctagagactccggg
atggtccctatctctcaagtcaatggaacagtaacttatgtagacgctaatatcattgtt
gttactgatgaagaaggttccgagcatcatcattctttgcagaaatatcaacgttctaat
caggacacatgcttgaatcaaagacccattgttcataatggcgatccggtaattattggt
caggttcttgcagacggatctgcatgtgaaggaggagaaatagccttaggtcaaaatgtc
ttaatcgcttatatgccttgggagggttataactatgaggatgcaattttagtcagtgag
agattagtaaaagatgatctatatacttcagtgcatattgaaaaatatgagattgaagct
cgacaaacaaaactaggcccagaggaaataacgagggaaattcccaacatagccgaagaa
agtttgggtaatcttgatgaaatgggcattattaggattggtgcttttgttgagagcgga
gatattcttgtaggaaaagttacccctaagggggagtctgatcaacctcctgaagagaag
cttttaagggctatatttggtgaaaaagcaagagatgtaagagataattcattgagagtt
cctagtactgaaagaggtcgagtcgttgatgtgcgtatttatacgagagaacagggtgat
gaacttccgcctggagcaaatatggtagttcgagtttatgtggcacaaagaagaaaaata
caagtaggggataagatggcaggacgccatgggaataagggaattattagtcggatactt
cctagagaagacatgccttatttgcctgatggaaccccagtagatattgtccttaaccct
cttggtgtgccaagtagaatgaatgttggacaagtttttgagttgttgatgggttgggca
gcctcgaatttggattgcagggttaaagttgttccattcgacgaaatgtatggtgctgaa
aagtcctatcagacagtaactgcttaccttaaagaggccgctagtttgccaggcaaagaa
tgggtctacaacccagaagacccaggaaagctacttctaagagatggaaggactggagaa
ccttttgatcagcctgttgcagttggctactcacatttccttaaattagttcacttagta
gacgataaaattcacgctcgctctactggtccgtactctctagttactcagcaaccttta
ggaggtaaagctcaacaaggaggacaacgtttaggagaaatggaggtttgggctttagag
gcttatggagcagcatatactttgcaagaattgttgactgtcaagtctgatgatatgcaa
ggtcgaaatgaggcgcttaatgcaattgtcaaaggcaagccaattccaaggccaggaacc
ccagaatcgttcaaagttttaatgcgagaacttcagtctcttggactagacattggagtg
tatacagatgaagggaaagaagttgatttgatgcaggatgttaatccacgtcgaagtact
cctagtagaccaacttatgaatcattgggatcagattatcaagaggattaa
DBGET
integrated database retrieval system
