Ectopseudomonas mendocina NK-01: MDS_4300
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Entry
MDS_4300 CDS
T01473
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MDS_4300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_4300
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_4300
Enzymes [BR:
pmk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MDS_4300
Transcription machinery [BR:
pmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MDS_4300
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MDS_4300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AEB60331
LinkDB
All DBs
Position
complement(4702476..4706549)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVYHVKNES
LSLELVPQRLRGEVAVLDIKDASGKVIVEQGRRITARHINQLDKAGIKELEVPLDYVIGR
TTAKAIVHPATGEIIAECNTELTADLLVKMAKAQVVRFETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGQVTDEIVFLSAIEEADHVIAQASATLNDKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
QVSRGDIMADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEISSDIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQQLDE
IRKDLNEEFRIVEGATFERLRSALVGAIAEGGAGLKKGTAITDEFLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRKFLAEIYNEIGGRQENLDEFSDNEILELAKNLKGGVPMATA
VFDGAKETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggat
gtcatggatgtgccttacctcctggccatccagctggattcgtaccgcgaattcctgcag
caaggggtgagcaaggaacagttccgtgacatcggcctgcatgcggccttcaaatccgta
ttcccgatcatcagctactccggcaacgccgccctggagtacgtcggctatcgcctgggc
gagccggcgttcgacgtcaaggagtgcgtcctgcgtggcgtgaccttcgccgtgccgctg
cgcgtgaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtgtacatgggcgaaattccgctcatgaccgagaacggtaccttc
gtcatcaacggtaccgagcgcgtgatcgtgtcccagctgcaccgttcgccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtactccgcgcgcatc
attccttaccgcggttcctggctggacttcgagttcgacccgaaggacgcggtcttcgtg
cgtatcgaccgtcgccgcaaactgccggcgtcagttctgctgcgcgcactgggctacagc
accgaagaagtgctggatgccttctacgacaccaacgtctatcacgttaagaacgagagc
ctgagcctggagctggtgcctcagcgtctgcgtggtgaagtcgcggtcctggacatcaag
gacgccagcggcaaggtgatcgtcgagcagggccgtcgtatcactgcccgtcatatcaac
cagctggacaaggctggtatcaaggagctggaagttccgctcgattacgtgattggccgt
accactgccaaggctatcgtgcacccggctaccggcgagatcatcgccgaatgcaacacc
gagctgaccgccgacctgctggtcaagatggccaaggcgcaggttgtccgcttcgagacc
ctgtacaccaacgacatcgactgcggcccgttcatctccgataccctgaagatcgacagc
accaccaatcagttggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgctgccgaaaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgtgggccgcatgaagttcaaccgccgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgagcaaggaagacatcgtagccgtgctgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgtgcgttgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgtgtagaacgcgcggtc
aaggaacgcctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaggagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtctccgcactcggcccg
ggcggtctgacccgtgagcgcgccggcttcgaagtccgcgacgtacacccgacccactac
ggccgtgtgtgcccgatcgaaaccccggaaggtccgaacatcggtctgatcaactcgctg
gctgcctatgcccgcaccaaccagtatggcttcctggaaagcccgtaccgcgtggtcaag
gaaggtcaggtcaccgacgagatcgtgttcctgtccgccatcgaagaagccgatcacgtg
atcgctcaggcgtccgcgaccctgaacgacaagggtcagctgatcgacgagctggtcgcc
gtacgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggtagtctcggttgccgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgcaacgtcgcccgtgactctggcgtctgc
gtcgtggctcgtcgtggtggtgtgatcgattccgttgatgccagccgcatcgtggttcgt
gtcaatgatgacgaagtcgaaactggcgaagccggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgcccgctggtgagcaagggtgat
caggtatcgcgtggcgacatcatggctgacggcccgtccactgacatgggtgaactggcg
ctgggtcagaacatgcgcgtggcgttcatgccgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggttcaggaagaccgcttcaccaccatccacatccaggag
ctcacctgtgtggcgcgtgacaccaagctcggcccagaggaaatctcctctgatatcccg
aacgtcggtgaagctgctctgaacaagctggacgaagccggtatcgtctacgtcggtgcc
gaggtcggcccgggcgacattctggtcggtaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgcgtgccgaccggcaccaagggcaccgtcatcgacgtgcaggtcttcacc
cgtgatggtgtcgagcgcgacagccgcgccctggccatcgagaagcagcaactggacgag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgttcggctttggttggcgcgatcgccgaaggtggcgctggcctgaagaaaggcaccgcg
atcaccgacgagttcctcgacggtctcgagcgtggccagtggttcaaactgcgcatggcc
gacgacgccctgaacgagcagctggagaaggcccaggcctatatctccgaccgccgtcag
atgctcgacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccgggcgtactgaagatcgtcaaggtctacctggccatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtggtctcggtgattatgccggtcgaa
gacatgccgcacgacgccaacggtacgccggtggacatcgttctgaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctggcggccaagggc
ctgggcgagaagattaaccgcatgctcgaagagcagcgcaaggttgccgaactgcgcaag
ttcctcgccgagatctacaacgagatcggtggtcgccaggaaaacctcgacgagttctcc
gacaacgagatcctcgagctggcgaagaacctcaagggcggtgtgccgatggcgactgcc
gtgttcgacggcgccaaggaaaccgagatcaaggccatgctgaagctggccgatctgccg
gaaagcggccagatgcgtctgttcgacggtcgtaccggtaaccagttcgagcgcccgacc
accgtcggctacatgtacatgctgaagctgaaccacctggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgcttcggggagatggaggtctgggcgctggaagcctacggcgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgta
ctgatcaaagagatccgttcgctcggcatcgacatcgatctggaaaccgaataa
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integrated database retrieval system
