Penaeus monodon (black tiger shrimp): 119595147
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Entry
119595147 CDS
T08784
Name
(RefSeq) LOW QUALITY PROTEIN: putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119595147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoo03041
]
119595147
Enzymes [BR:
pmoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119595147
Spliceosome [BR:
pmoo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119595147
Complex C
U5 SnRNP specific factors
119595147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
HTH_61
AAA_19
PhoH
nSTAND3
DEXQc_Suv3
DnaB_C
SWI2_SNF2
TcA_RBD
DrmE_N
Motif
Other DBs
NCBI-GeneID:
119595147
NCBI-ProteinID:
XP_037800246
LinkDB
All DBs
Position
35:complement(26726263..26741004)
Genome browser
AA seq
2133 aa
AA seq
DB search
MADQTARQLQYEYKANSNLVLQADVRLIERRGKDEATGEVMSLTGKLEGTRMGDRYQRTR
PQQPKEEQRKSKKQKREDAPSIAVKNMTILELDDMADIFYRPKSTDTKQTYEVILSFIQE
ALGDQPRDVLCGAADEVLSVLKNDKLKDRERKKETEELLGSLAEERFAVLVNLGKKITDF
GHETKTVANEAVLDETHGVNVQFEDSEEEEEDDVAGEVRDDEEEEIDAEESAAGSHAIHA
ENLTGGDQVGAKKERVLSPHDIGAHWLQRELNRFYNDPIQAQTKSSDVLEILKTAKDDRE
CENKLVLNLGYDKFEFIKILNKNRQMVLYCTLLASAQSETEKEEIRRIMLAEPNLKRILA
LLENEEEAMDMNDNGEELGGSRPRRINTEAMEVDDRSGQVPGHREYVDLEALVFTTGSHY
NSNKKCHLPEGSTRQMKKGYDEIHVPALKPKPFAPDETLVPIANLPTYAQPAFDGFKNLN
RIQSKLFKAAMDSDENLLLCAPTGAGKTNVALLTILREVGKNTNPDGSINGDAFKIIYVA
PMRSLVTEMTQNFSKRLESYGLKVGELTGDHQLTREQIMETQVIVCTPEKWDVITRRGGE
RSYTQLVRLIIFDEIHLLHDERGPVLEALVARTLRNAETTGDIVRLVGLSATLPNYEDVA
AFLRVSLKTGLFFFDNSFRPVPLAQQYIGITEKKAIKRYQVMNDILYEKVMEHAGKNQIL
IFVHSRKETAKTAKAILDMCLEKDTLGNFLREGSASTEVLRTEAEQVKNNDLKGLLPYGF
AIHHAGMNRVDRNLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVIKGTQVYDASKGRWV
ELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLMNQQLPIESQLIAKLPDLLN
AEIVLGSVQSVRDAVNWLGYTYLYVRMVRAGNLYAVQSDTSDKYLQQHRANLIHSAALKL
EKGNLIKYDKKSGNFQVTELGRIASYFYITFDTMNVYNQQLKPTLSEIELFRVFSQSSEF
KNLMVREEEKLELKKLMERVPIPIKESVEEPSAKVNILLQAYISQLKLDGFALMSDMVYV
TQSAGRLMRAMFEIVLHRGWAQLADKTLNLCKMVDKRMWQSMSPLRQFRKIPEEAIRKLE
KKSIPWERLYDLGPNEIGELIRMPKGGKMIHKYIHQLPKLDLETHIQPITRQMLKVELTI
TPDFKWDEKVHGRSQAFWILVEDVDAENILHHEYFLLKQKFNEDEHVIKFFVPVFEPLHP
HYFIRITSDTWLAAETQLPVSFRHLILPEKYPPPTELLDLQPLPITALRNPQYEALYKTL
NRNQQFNPIQTQVFNATYNSDDSVFIAAPTGSGKTLCAEFAILRMFSQDETARCVYVASK
DEIVESMYDHWQEKFGNLDKRVVLLTGETGADLKLLNKANIVVSTAEKWDVLSRRWKQRK
NVQNISLFIVDELQLMGGSDGPTLEVVCSRIRYIASKISKHIRILALSSSLANARDVAQW
LGCSSNYTFNFHPNVRPLPLELHIQGFNNPHNASRIYAMAKPAYSAILKHSPRKPAMVFV
PSRKQSMITASDLLTFAAADKEPQRFLQVNPEEMTEFLPQISDEMLRELVSQGVGYLHEG
LSARDRRMVERLFEAEAIQVVVVSRALCWAVTAPAHLVVIMDTQSYNGRLHNYEDYPITD
TLQMVGRANRPNDDDEAKCVLMCHSSKKDYFKKFLYEPLPIESHLDHALHDHFNAEIVTR
TIENKQEAVDYVTWTFLYRRMTQNPNYYGLQGVSHRHLSDHLSDLVENTLHDLEESRCIT
IEDDMDTAPLNLGIIASYYYINYTTIELFNKSLNSKTKIRGLLEIISSAAEYENVPIRHG
EEDTLRRLIQKVPNKPEGKPTDPHTKTNLMLQAHLTRLTLSAELQQDTELVLGRALRLIQ
ACVDVLSSNGWLAPALSAMTLAQMVTQAMWSKDSYLKQLPHFTSDMIERCEAKDVTSVFD
ILELEDDDRNRLLQLSDAQMTDVARFCNRYPSINLDYEVVDSDSITSGAMVNVEVVLERE
DEPGPVIAPLFPHKREEGWWVIIGDPKANSLISIKRLTLQQKAKVKLDFVAPSEGSYEYR
LYFMSDAYMGCDQEYKVPLRVREAESESDSDSD
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccaaacagcgcgtcaacttcagtacgaatataaagcgaactcaaacctcgta
ttacaagcagatgtccggctcatcgagagacgtggcaaagatgaggccaccggagaagtc
atgtccctcacggggaagctggagggtacgcgcatgggggaccggtaccagcgcacccgc
ccacagcagcccaaggaggagcagaggaagtccaagaaacagaagcgcgaggatgccccc
agcattgccgtgaagaacatgaccattctggagctggacgacatggccgacatattctac
agaccaaagagcactgacacaaagcagacctatgaggtaatcctatcatttatccaggag
gcccttggggaccagcccagggacgtcctttgtggtgcagccgatgaagtcctgtccgtc
ctcaaaaatgacaagctcaaagacagagaacgcaagaaagagactgaggagttgctgggg
agtctggcagaggaaaggtttgcagtgctagtcaacttagggaagaaaatcacagatttt
ggccatgagacaaagaccgtggcaaatgaggctgtgctagatgagactcacggtgtcaac
gtgcagtttgaagattcagaggaggaagaggaggatgatgtggcaggtgaagtgcgagat
gatgaagaagaagaaattgatgcagaagagagtgctgcaggatctcatgccatccatgca
gagaacctcacagggggtgaccaggtgggagccaagaaggagagagtgctgagcccacac
gacatcggtgctcactggcttcagagggagctgaacagattttacaatgatccaatacag
gcgcagacaaagtcaagcgatgttctcgaaattctcaaaacagcaaaggatgacagagag
tgtgaaaataaacttgtgctcaatcttggctacgataaatttgagtttattaaaatttta
aacaagaatcgacagatggtgttatactgcacactccttgcctcagcccagtctgaaaca
gaaaaagaagagattcgccgaataatgttggcagagcctaatctgaaaagaatcctggct
ttgcttgaaaacgaggaggaggccatggacatgaacgacaacggagaggaattgggtggt
tctcgaccaagaagaatcaacacagaggcaatggaagtagatgacaggtcaggacaggtc
cctggtcatagggaatatgtagacctggaggctcttgtatttacaacaggttctcattac
aactccaacaagaagtgccatcttccagagggctcaacaagacagatgaagaaaggctat
gatgagatccacgtccctgccctcaaacccaaaccctttgctccagatgaaaccctggtc
cccattgccaacctgccgacttatgcccagcctgcctttgatggctttaagaacctcaac
agaatccagagcaagttgttcaaggcagccatggacagcgatgaaaatttactgctttgt
gctcccactggtgcaggtaaaaccaatgttgctctgcttaccattttaagggaagttggc
aagaacaccaacccagatggctccatcaatggggatgcattcaaaatcatatatgtggcg
cccatgcgctcccttgtaacagagatgacccagaacttctcaaagaggctggagtcatat
gggctgaaggtaggggagctgactggtgatcatcagttgacgcgagagcagattatggaa
acccaagtgatcgtgtgtacgccagagaagtgggatgtcatcacaagacgtggtggtgag
aggtcatacactcaacttgtcagacttattatatttgatgagatccatctactccacgat
gaacgaggccctgtacttgaagctttggtggcacgtactctgagaaatgctgaaacaacg
ggggacattgttcgtttggttggattgtcagccacgttgccaaattatgaagatgtcgca
gctttcctgagagtcagcctaaagactggactgttcttctttgacaacagcttccggcca
gtgccccttgcacagcagtatattggtattactgagaagaaggctatcaagagataccaa
gtcatgaatgatattctgtatgaaaaggtgatggagcatgctggaaagaaccagatcctg
atttttgttcactcaagaaaagagaccgcaaaaactgctaaggcaatcctggacatgtgt
ctggagaaagatactcttggtaatttcctgagagagggatcggcatccacagaggtgttg
cgcacagaggctgaacaggtcaagaacaatgaccttaaaggattactaccgtatggcttt
gctattcatcatgctggaatgaacagagtggatcgtaacttggtggaagatctgtttgct
gatcggcacattcaggtgttggtgtccactgccacccttgcctggggtgtgaaccttcca
gctcacactgtagtgattaaaggaacacaagtctatgatgcaagcaagggacgttgggta
gagctgggtgctctagatgtactgcagatgctgggacgtgcaggtcgtccccagtatgat
acaaagggtgaaggcatcctcatcaccaaccattcagagctgcagtattacctttccttg
atgaatcaacagttgcctattgaatcccagttgatagctaagttgcctgaccttttaaat
gcagaaattgtcttgggatctgttcagagtgttcgtgatgctgtgaactggttgggttac
acatacttgtatgtgagaatggtccgtgcaggcaacttgtatgccgtgcagtctgacact
tctgataagtacttgcagcagcatcgagccaacctcatccattcagcagccctgaaacta
gaaaagggcaacctcatcaaatacgataaaaagagtgggaatttccaggtcacagagttg
ggacgcattgccagttacttttacatcacatttgacaccatgaatgtctacaaccagcag
ttgaagccaaccttgagtgagattgaattattcagggtcttctctcagagttctgagttc
aagaaccttatggtgagagaggaggaaaagctggagttgaagaagttgatggagcgcgta
ccaattccgatcaaggagagtgttgaagaacccagtgcaaaggtcaacatcctcttgcag
gcttatatttctcagctcaaacttgatggttttgctctcatgtcagatatggtctatgtg
acacaaagtgctggaaggctgatgagagccatgtttgagattgtgcttcacaggggctgg
gcccagctggcagacaagactctgaacctctgtaagatggtggacaagaggatgtggcag
tccatgtcaccccttcgccagttcaggaagatcccagaggaggccatccgcaagctggaa
aagaagagcattccctgggaacgtctctatgatttgggccctaacgagattggtgagctc
atccgcatgccaaaaggaggaaagatgatccacaagtatattcatcagctaccaaagctg
gacctggagactcacatccagcccatcacccgccagatgctcaaggtggagctcaccatc
acccctgatttcaagtgggatgagaaagtccacggacgctcccaggcattctggatcttg
gttgaggatgtggatgcagaaaatatcctccaccatgaatatttcctcctgaaacaaaag
ttcaatgaagatgagcatgtcatcaagttctttgtgcctgtgtttgagcctctccatccc
cattacttcatccgcatcacttctgacacatggcttgcagcagagactcagttgcctgtg
tccttccgccatttgatccttcctgagaaatatccacctcccactgagctgcttgacctt
cagcctctgcccatcactgctctcaggaacccacagtacgaggcgctctacaaaaccctc
aacagaaaccagcagttcaaccccatccagactcaagtcttcaatgcaacctacaactca
gatgacagtgtgttcattgctgctcctacaggttctggcaagactctgtgtgctgagttt
gctattttgagaatgttcagccaggatgagaccgccaggtgtgtgtacgtggcctccaag
gacgagattgtagaaagcatgtatgaccactggcaggagaagtttgggaacctggacaag
agagtagtgctgctgactggtgagactggtgcagatctcaagctccttaacaaagcaaac
attgtggtaagcacagcagaaaagtgggatgtgctctctcgccgttggaaacagaggaaa
aatgtgcagaatatcagtttgtttattgttgatgagctgcagttgatgggaggctctgat
ggccctacattggaagtggtttgttctaggattcgttacattgcctcgaagatcagcaaa
cacatcagaatactggccttgagttcttccttggccaatgccagagatgtggcacagtgg
cttgggtgttcttcaaactacactttcaatttccatccaaatgttcgtccattgccacta
gaactgcacattcaagggttcaacaatccccacaatgcttcaagaatatatgccatggcc
aaacctgcttattcagctatcctaaagcacagtccaaggaagccagcaatggtgtttgtt
ccctcaagaaagcagagtatgatcacagcaagtgacctccttacctttgctgcagcagac
aaggaacctcagagattcttgcaggtaaaccctgaggaaatgacagaattcctcccgcag
ataagtgatgaaatgttgagggaactggtgagccagggtgtaggatacctgcatgagggt
ctcagtgccagagaccgcaggatggttgagcggctcttcgaggcagaagccatccaggtg
gttgttgtgagtcgtgcattgtgttgggctgtgacagcacctgctcacttggttgttatc
atggacacacagagctacaatggtcgtcttcacaactatgaagattatcccatcacagac
accctgcagatggtaggtcgtgcaaatagacctaatgatgatgatgaagccaagtgtgtc
ctcatgtgtcattcctcaaagaaggactactttaagaagttcttgtatgagcctctgccc
atcgagagccatcttgaccatgccctccatgaccatttcaatgctgagattgtcacacgt
accattgaaaacaaacaggaggctgtggactatgtcacttggactttcttataccgccgc
atgacacagaaccccaattactatgggctacagggtgtgtctcatcgtcatttgtcagat
catctctcagacctggtggagaataccctccatgacctggaagagtcaaggtgcatcacc
atcgaagatgacatggacacagctccccttaacttgggaatcattgcctcatattattac
atcaactatactacaattgaattgttcaacaaatcactcaacagtaagacgaagatcaga
ggtctgctagagatcatctccagtgctgcagagtatgaaaatgttcccattcgccatggg
gaggaagacaccctgcgacgtctcatacagaaggtgcccaacaagccagaagggaagccc
actgacccacacacaaagaccaaccttatgttgcaggctcatctcacacgcctcacactg
agtgctgagttgcagcaagacacagagctggttctgggacgtgctctcaggctcatccag
gcctgtgtagatgtgctctcatccaatggttggttggcacctgctctgtctgccatgaca
ctggcacagatggtgacgcaggctatgtggtccaaggactcgtatctgaaacagctgcca
cacttcaccagcgacatgattgagaggtgtgaagcaaaggatgtcacttcagtctttgat
atcctcgaattggaggatgacgaccgaaaccggttacttcagctttcggacgcccagatg
acggatgtggctcgcttctgcaaccgctacccaagcatcaacctggactacgaggtggta
gattcggactccatcacgagtggagcgatggtgaacgtggaggtggtgctggaacgtgag
gacgagccgggccctgtcatcgccccgctcttcccccacaagcgcgaggagggctggtgg
gtcatcatcggcgacccgaaggccaactcgctcatctccatcaagcgcctcacactccag
cagaaggccaaggtgaagctggatttcgtggcgcccagcgagggtagctacgagtacagg
ctctatttcatgagtgatgcatacatggggtgcgatcaggagtacaaggtgccgctcaga
gtgagggaggcggagtcggaatctgattctgacagtgattaa
DBGET
integrated database retrieval system
