Petromyzon marinus (sea lamprey): 116946018
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Entry
116946018 CDS
T09614
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116946018 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116946018 (CNOT1)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116946018 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116946018 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116946018
NCBI-ProteinID:
XP_032816685
UniProt:
A0AAJ7TF36
LinkDB
All DBs
Position
25:13108050..13140470
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSLALSQIGYLVDNLTKKNYKTSQQEIAHLVSNHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECIALITKPNFVSTLCYAIDNPLHYQKSLRPSPHLLTQLSKVLK
LSKVQEVVVGLALLNSSNQDLQGFAGQFVKQKLPDLLRSYVDSEVGGQQEGGFQDIAIEL
LHLLLSLLLYGPRGTFCVAQEQLQAFLQTLRKDFPRERCPVVLSPLLYLDKADLLMDRLL
PDTSGMAKTSMEGSLADLMQEVGYSCCSSIDECRTLIVQFGVRDVQALQVARVLGMMARS
HSSLTDGMPLQSICGPGGSIWSDGKDKSESTQTHTWNVEIFIDVVKDPNLHINFKEVAYE
LDHPGFQIKDGKGLQIVVYGIQKGLGMDVFPVELVYRPWKNTDGQMSFIQHSLLNPDVFC
FADYVCHTVVTDILKAPPEDDNREIATWKSLDLMETLLRLAESGHYEQVKQLFSFPLKHC
PDLLVLALLQINCTWNTLRHDLISLLMPIFLGNHPNSAIILHYAWHGQGQSPTIRQLIMH
AMAEWYMRGEQYDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLAVLASRREYLKLDKW
LTDKIREHGEPFIQACVSFLKRRCPSIMGGLPPEKEQPKSAQLPPETLAAMLACLQACAG
NVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRVSSTSTLDSISPVQVRTPERLDAL
SSIASLNISGAAPAHAGGMQAFPPNLGQTFNAPPSPAKAFPPLSAPSQSPFSSLGLTSQL
PVPGLGSGGLSGMSSSNLGLQGVGTSDPFSQRKLNLPGINPPAFQQSKLKPSDLSQVSPE
MSQQFSKEIDDEANSYFQRIYNQPPHPTMSVDEVLEMLQSFKDSNNKREREVFNCMLRNL
FEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKAFGSKMYYFGI
AALDRFKNRLKDYPQYCQHLASIAHFSQFPHHLIEVTGAAIDSASPTQYIEYGQQSRDPP
VKMQGSITTPGSIALASSLSHTKPSLPSPAITTMAPPSALTNTLVPKATTGTKTTPTNFK
KDAPPSINTTNIDTLLVATDISDRIIEPQESVQDKIFFIFNNLSQSNMAQKTEELKDSVK
DESMPWIAQYLVMKRVSIEPNFHGLYSNFLDTLKNPDFTKIVLNETYRNIKVLLTSDKQA
ANFSDRSLLKNLGHWLGMVTLAKNKPILQIDIDVKSLLLEAYMKGQQELLYVVPFVAKVL
ESCSKSLVFRPPNPWTMAIMNVLAELHQEPDLKLNLKFEIEVLCKTLALDINELKPGNYL
KDKDRMKTVEEQLSAPKKEVKPVDEVLVQPPPVTTVITSGTTTTTTAAGPPQPQFNFYDI
NVYSLTGLAPHVSIAPSIGLFQTHPHLKQCVRPSLERAVQELVHPVVERSIKIAMTTCEQ
IVRKDFALDPEESRMRAAAQHMMRNLTAGMAMITCREPLMVSIANNLKNNFLATLRVSLD
EHIIGPATFPQKDIIDQAANQLAQDNCELACCFIQKMAVEKAGPEMDKRLATEFELRKHA
RQEGRRYCDPVVLTYQAERMPEQIRLRVGGVDPKQLAVYEEFARCIPGFLPNNDITQPTG
FLTKPMQQQWGTDDITAVYDKCIAELEHCLHTLPGTVAMNPHVAAMQSLLEAVLLARNSR
EIVTAVALLQKAVEGLLDATVGGDHEIIVRYRDCHLLVLKAVQDPRAYGPMWTSKQVTRC
LMECRDEYRYNVEAVELLICHHLVNMQQYDIHLAQSMENGLNYMAVAFAMQLVRIHLVEE
RGTPQITEADLFNTIETLMRINAHSRVNAPEGLPQLMEVIRTNHEPMMDRTHAGPTSMMH
SGISQAREYDDPPGLHEKAEYLLREWVNMYHSPAAGRDSTKAFSAFVGQMHQHGILKTDD
LITRFFRLCTEMCVDLCYRALNEQHLNPAANPTLTRAKCFHTLDAFVRLIALLVKHSGDA
SNTVTKINLLNKVLGIVVGVLLQDHEIRRTDFQQLPYHRIFIMLLLELNAPEHVLESINF
QTLTAFCNTFHILRPSKAPGFTFAWLELISHRIFIARMLAHTPQQKQGWPMYAQLLIDLF
KYLSPFLRNVELTKPMQVLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI
LSAFPRNMRLPDPFTPNLKVDMLSEINIPPRILTNFTAVMPSQFKKDLDPYLKTRSPVTF
LSELRGNLQVSNEPGMRYNIPLINALVLYVGTQAIAHINSKGSSPSMGTITHSAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPSFKFWDHEFVHCAPEIQKLFQSVAQCCMGQKQTQQVMEG
TATS
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcattggccctatcgcagatcggctacctggtggacaatttg
accaagaagaattacaagacgagccaacaggagatcgctcatcttgtgagcaaccacggc
cccgaggcagacagacatctgcttcgctgcctcttctctcatgtggatttcagcggcgat
ggtaaaagtagcggaaaagatttccatcagacccagtttctgatccaagagtgcattgcg
ttgataaccaagccaaactttgtatcaacgctttgctacgccatcgacaatcccttgcac
tatcagaagagcctccgaccatcccctcatttgcttactcagctcagcaaagtgttgaag
ttgagcaaagttcaagaggtggtggttggtcttgcactgttaaactcttcgaatcaagac
ctccagggatttgcggggcagtttgtgaaacagaagctgccggatttgctgcgatcgtac
gttgatagcgaggttggtgggcagcaggagggtggcttccaggacattgccatcgagttg
ctgcatctgctgctttctctgctgctctacgggccgcggggaactttttgcgttgcccaa
gagcagctgcaggctttcctgcagacattacgcaaagatttcccgagggaacgttgcccg
gtggtgctatcaccgctgctatatcttgacaaggcagacctgctgatggaccgcctcctg
cctgatacatccggcatggccaaaacctcaatggaaggctccttggcagacctcatgcag
gaggttggatacagctgctgttccagcattgatgaatgccgtaccctcatcgtgcagttt
ggcgtgagggatgtacaggcattgcaggtggctcgggtgttggggatgatggcaagatct
cactccagcttgacagatgggatgccattgcagtctatatgtggtcctggaggaagcatc
tggagtgatgggaaggataagagtgaatcgactcaaactcatacttggaatgtggaaatt
ttcattgacgttgtcaaagaccctaacctgcacattaatttcaaggaagtggcttatgag
ttggatcaccctggctttcaaatcaaggatggaaagggactacagatcgttgtttatggc
atacaaaagggattgggcatggatgtctttccagtggaacttgtttatcgtccctggaaa
aacaccgacgggcagatgtctttcattcagcactcgttgctcaacccagatgtgttttgc
tttgccgattatgtctgtcatactgtggtcactgacatcctcaaagcccctccagaggat
gacaacagagagattgctacctggaaatcactggatctaatggaaacattgctgagactg
gcagaatctgggcactatgagcaggtgaagcagctgttcagcttcccactcaagcactgc
ccagacctgctggtgttggcgctgctacagatcaactgcacctggaacacactgcgccat
gatctcatctccttgctgatgcccatcttcttggggaaccaccccaactctgccatcatc
ctacactacgcctggcacgggcaggggcagtctcctaccatccgacagctcatcatgcac
gccatggccgagtggtacatgagaggagagcagtacgatcagacgcgcctctcccgcata
ctcgatgtggcccaagacctaaaagccctctcgatgctgctaaatgccacgccgtttgcc
ttcgtcattgatttggctgtgctggcatctcgtcgcgaatacctaaagcttgacaaatgg
ctcacagacaagatccgtgagcatggggagccattcatacaagcttgtgtaagcttcctg
aagcgtcgctgcccttcaatcatgggtggtcttccccctgaaaaagaacaaccgaagagt
gcccaacttccacctgaaaccttggctgccatgttagcctgcttgcaggcctgtgcaggc
aatgtatcgcaagagctttcggagactatactgaccatggtagcaaactgcagtaatgtg
atgaataaggctcggcagcctccaccgggcgtaatgcccaaaggccgtgtttcaagcacg
agcacactggactccatctcgcctgtgcaggtcaggacacctgagaggctggatgcacta
tccagtattgcctctctcaacatcagtggagcagcacctgcccacgccggtggtatgcag
gcctttccacccaaccttggacaaaccttcaacgcacctccgtcaccagccaaggccttt
ccaccgctctcagcacccagccaatctccattctccagcctggggcttacctcccagctg
cccgtgccaggtcttggaagtggaggcctgagtgggatgagcagctcgaacctgggactg
caaggcgttggcacaagcgatccattcagccagcgcaagctcaacctcccggggataaac
cccccagccttccagcagagtaagctgaagccgtctgacctgtcacaggtgtctccagag
atgagtcagcagttcagtaaggagattgatgatgaggcaaacagctacttccaacgcatc
tacaaccaacccccccaccccaccatgtctgtggatgaggtgctggaaatgttgcagagt
ttcaaggactcgaacaacaaacgagagcgagaagtgttcaactgtatgctgcgcaatctt
tttgaagagtaccgcttcttcccacaatacccggacaaagagctgcacatcacagcctgc
ctgtttgggggcattattgagaaggggctcgtgacatacatggctctgggccttgcccta
cgctatgtgctggaggccctgcgcaaggcctttggctccaagatgtactattttggcatt
gccgctctggaccgtttcaaaaacagattgaaagattatccccaatactgccagcacctt
gcatcgattgcacacttcagccagttcccacatcacttgatagaggtgactggagccgcc
atcgattctgcttcccccacacagtacatcgagtacggacaacaatctcgagaccctcct
gtgaagatgcagggctccatcaccacacccggcagcatcgcactggctagtagtctgagc
cacaccaagcccagcttgcccagccctgccatcaccaccatggcaccaccctctgccctt
acgaacacactcgtccccaaggcaacaactggaaccaaaactacacccaccaactttaag
aaagatgccccgccttccattaacactacaaacattgacactttgctggtggcaacggac
atttcggatcgcataattgaaccccaagagagcgttcaagacaaaatatttttcattttc
aacaacctctcgcagtccaacatggcacagaagactgaggaactaaaggacagtgttaaa
gacgagtctatgccttggatagcacaatacctggtgatgaagagagtgagcattgagcca
aattttcatgggctctactcgaacttcctcgacaccctgaaaaatccggacttcactaaa
atagtgctcaatgaaacctacaggaacatcaaggtgctgctaacatccgacaagcaggct
gcaaatttttcagaccgttcccttctaaagaatctgggtcactggttgggaatggtgacc
ctggctaagaataagcctattctgcagatagacatagatgtcaagtccctgctcctggag
gcatacatgaagggacagcaggagctactctatgttgttccatttgtagccaaagtgctg
gagtcctgctctaagagtctggtgtttcgtcctccaaacccctggaccatggcaatcatg
aacgtgcttgccgagttgcatcaggaaccagacctaaagctgaacctgaaatttgagata
gaagttctctgcaagactctggcgcttgacatcaatgagctgaagcctggcaactacctc
aaggataaagatcgcatgaagactgtggaggaacagctttctgcacccaaaaaggaggtg
aagccagttgatgaagtattggttcaaccacctcctgtcaccactgtgataacaagtgga
acgaccacaactaccacagccgctggacctccgcaaccccagttcaatttctatgatatc
aacgtgtactcgctcaccggtctggctccgcatgtcagcattgctcccagcatcgggctg
tttcagacacacccacatctgaaacagtgtgtgcggccgtcgctggagcgtgccgtacag
gagctggtacacccagtcgtcgagcgatccatcaagatcgccatgaccacgtgcgagcag
attgttcgtaaggattttgcgctggatccagaggaaagccgcatgcgtgctgctgcgcag
cacatgatgcgcaacctgacagccggcatggcaatgatcacgtgccgagaacccctgatg
gtcagcatcgctaataacctaaagaacaacttcctggcgaccctgcgggtgagccttgac
gagcacatcatcggaccagctacattcccacagaaggatattattgaccaggcagctaac
caacttgctcaggacaactgtgagctggcatgctgcttcatccagaagatggctgttgag
aaagctggccctgaaatggacaagagacttgctaccgaatttgaattgagaaagcatgca
cgtcaagagggacggagatattgtgaccctgtggtgctcacttaccaggccgaacgcatg
cccgagcagatccgactgagagtgggtggtgtagaccccaaacagctggctgtatatgaa
gagtttgctcgctgcatcccaggatttctgcccaacaatgacatcacgcagcccactgga
tttctcacgaaacccatgcagcagcaatgggggacagacgacatcacggctgtgtacgac
aagtgcattgcggagctggagcactgcctccacacgctccctggcactgtcgccatgaac
ccgcacgttgctgccatgcaatccctgctcgaggccgtcctgctggccaggaactctcgc
gaaatcgtgacagccgtcgcactgctgcagaaggcggtggaaggacttctcgatgccacg
gtgggtggtgatcatgagatcatcgtgcgttacagggattgccacctgctggtgctgaaa
gctgttcaagatccccgagcctatggccctatgtggaccagcaagcaggtcacaaggtgc
ttgatggagtgtcgtgatgaataccgctacaatgtagaggctgtggaactgctcatttgc
caccacctggtcaacatgcagcagtacgacatccaccttgcgcagtcgatggagaatggg
ctgaactacatggcggtggcgttcgctatgcagctggtgcgtatacaccttgtggaggaa
cggggcaccccgcagattacagaggctgacctcttcaacaccattgagacactgatgaga
atcaacgcccactctcgcgtcaacgctcctgaaggactgccgcagttgatggaggtgatt
cgaaccaaccatgaaccaatgatggaccgcacacacgctggccccacgtccatgatgcac
tctggcatctctcaggcgcgcgagtacgacgacccgcctggcctgcacgagaaggctgag
tatctgctgcgcgagtgggtcaacatgtaccactcgcccgcggccggccgcgacagcaca
aaggctttctctgcctttgtcggacagatgcaccagcacggcatcctgaagactgatgat
ttgataacgcgcttcttccggctgtgcacggagatgtgcgtggacctgtgctatcgtgca
ctgaacgagcagcaccttaacccagccgcaaaccccaccctgacgcgcgccaaatgcttc
cacacgctggatgcctttgtgagactcatcgccctacttgtgaagcactccggcgatgca
tccaacaccgtcacgaagatcaacctcctgaataaggtgctgggaatcgtggttggcgtt
ctcctacaagaccatgagatacgtcggacggattttcagcagctgccataccaccgaata
ttcatcatgctgctgctggagctgaacgcacctgaacatgtgctcgagtccatcaatttc
caaaccctgactgccttctgcaatacgttccacatcctgcgtccatccaaggctccaggt
ttcacgtttgcgtggctggagttgatctctcaccgcatctttattgctcgaatgctggcc
catactccacaacagaagcagggctggccgatgtacgcacaactgctcatcgacctgttc
aagtacctaagtcctttcctgcgcaatgtggagctgacaaaacccatgcaggtgctctac
aagggaacattgcgagtgctgcttgtactcctgcacgacttcccggagttcctatgtgac
taccactatgggttctgcgatgtcattccaccaaactgcatccagctgaggaacttgatc
ctcagtgccttcccacgcaacatgcgtctgcctgaccccttcactcccaatctgaaggtg
gatatgctgagcgagatcaatataccgccacgcatccttacaaatttcacggctgtgatg
ccgtcacaattcaagaaagatcttgacccttatctgaagactcgctcaccggtcacgttc
ctctcagagctacgtggcaacctgcaggtttctaatgagccaggcatgcggtacaacata
ccgctcatcaacgcattggtgctctacgttggcacccaggccattgcgcacatcaacagc
aaaggcagctcgccgtccatgggcactatcacccactctgctcacatggacatcttccag
aacttggctgtggaccttgacaccgaaggtcggtacctgttcctgaatgccatagccaac
cagctacgctatcccaacagccatacgcactatttcagctgcaccatgctctacttgttt
gccgaagccaacactgaagcaattcaggagcaaattactcgggtactgctggagcgactg
attgtgaaccgtcctcatccatggggcctgctcatcacctttatcgagctcatcaagaat
ccctccttcaaattttgggaccacgagtttgtgcactgtgccccagaaatccaaaagctt
tttcaatcggtggcgcagtgctgcatgggtcagaagcagactcagcaggtgatggagggg
acggcgacaagctaa
DBGET
integrated database retrieval system
