Petromyzon marinus (sea lamprey): 116948564
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Entry
116948564 CDS
T09614
Symbol
PAN2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116948564 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116948564 (PAN2)
Enzymes [BR:
pmrn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116948564 (PAN2)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116948564 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
116948564 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_like
Beta-prop_WDR3_1st
Beta-prop_LRRK2
eIF2A
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
116948564
NCBI-ProteinID:
XP_032821221
UniProt:
A0AAJ7X4I0
LinkDB
All DBs
Position
34:complement(1318246..1342959)
Genome browser
AA seq
1180 aa
AA seq
DB search
MEYNALNGSLGNYAGALHPGMDSSLDPALHGGLEPVGLGATMMDGDGMPIDSLPVGEGLP
LMEGAYSELHSIISEVGVPISTSHFDVHEELLWVGNQGGRVASYYGPAMERYSAFVVHPA
DEVRQVQSLDNGVLLLTKNNLKCFSRGGLIMCDYMTEEAHEMHCMLLTSNNSLLIGGQQN
HILELDLSSAQEMQKYDVETTGVTIMKQANRFFFCGHAGGKVTLHDPRTFKPEHEFEAHS
NNLLDFDVHGNLLVTCGLTARLNRLACDRFLMVYDMRMMRAVTPLQVHLEPAFVRFIPTY
TSRLAIISQTGQCQFCEPTGLANPADMMHVDTVGQLIMAFDVSSSRQALAFGDSGGCLHL
WADSPQVTFNEYSRETEFPLPCMSDSVPHLDWSDDLAPLSLVSMPYTSDALLSDWPTSNC
AAIRRRAPPVDPEILRSMKMVGFIGYAPNPRTKLRNQMPYKLNEADGEADGYSQVPESPI
GREEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNKTMFAGLETHIPNAYCNSMIQVLY
FLEPVRRSIQSHLCQKEFCLACELGFLFYMLDLSKGDPCQASNFLRAFRTIPEASALSLI
LADSDEATGKVNLGQLIQSWNRFILTQLHQEMQEQEGMPAYRSITGSAQASSESVVSQLF
GTELDNCSTCRCGKETSRVSSSLLFTLHHPDTSKDEPGKLYEFVELLRRSICLDQSTQAW
CEVCEKYQPTVQTRKLRRLPDVLVINCQVNSPKDCEFWRNQSEIAYRRLVSKEEAEGTKA
HPPAKIPEWPMAAEGLELGSNLDEMKNVWIPFAFRTKLAEDGSLDITPWSELDKVEDGED
DGGGRVYHLAASVAHVLDQRTGGNLMAHVRVGETYHHRKEGVTHFQWYLFNDFLIEPIDK
FEAVQFDVSWKIPCVFYFVRQDLNSKYNVSIKNPIESSVLLAEASLARKQRKRNATFMPL
QISELPHKGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQGAHEGIP
FIDDYISTQEQVVDYLTQFSGIKPGDLDAKVSSKHLTTLKSTYLKLRFLIDNGVKFVGHG
LRKDFRVINLMVPKEQVIDTVILFHIPRKRMISLRFLAWHFLELHIQAETHDSIEDANTA
LQLYRKYLALSNNGHDVDGFRKTLKQLYEEGRKRDWKVPE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggagtacaacgcgctgaacggcagccttggcaactacgccggagcattgcaccccgga
atggactccagcctggacccagccctgcacggtggcctggagcccgtgggccttggtgct
acaatgatggatggagatggcatgcctatcgacagcctgcctgtcggggagggacttccg
ctgatggagggtgcctactcggagctgcacagcatcatctcggaagtgggcgtgcccatc
agcacctcgcacttcgacgtccacgaggagctgctctgggttggcaaccaggggggccgc
gtcgcctcgtactatgggccagcgatggagcgctactcggcgttcgtcgtgcaccccgcg
gacgaggtgcggcaggtgcagagcctggacaatggcgtgctcctccttaccaaaaacaac
ctcaagtgcttctcacgtggcggcctcatcatgtgtgactacatgacggaggaggctcat
gaaatgcactgcatgttgctcacgagcaacaactcgctgctgattggaggccagcagaac
cacattcttgagctggacctgagcagtgcccaggagatgcagaagtacgatgtcgaaacc
acaggggtgaccatcatgaagcaagccaacaggtttttcttctgtggccacgctggaggc
aaggtgaccctgcatgacccgcgcaccttcaagccggagcacgagtttgaggcccactcg
aacaacctgttggacttcgacgtgcacggcaacttgctggtcacctgcgggctcacggcg
cgcctcaaccggctggcgtgcgaccgcttcctcatggtgtacgacatgcgcatgatgcgc
gccgtgacgccactgcaagtgcacctggagcccgcgttcgtgcgcttcatccccacctac
acctcgcgcctcgccatcatctcccagactgggcagtgccagttctgtgagccgacaggc
ctggccaacccggccgacatgatgcacgtggacacggtgggccagctcatcatggccttt
gacgtctcctccagccgccaggccctggcgttcggggactctggcggctgtctgcatctc
tgggcggatagcccacaggtgacctttaacgagtactcccgcgaaacggagtttccgttg
ccgtgcatgtcggacagcgtgccccacttggactggagcgacgacttggcaccgctgtcg
ctcgtttccatgccgtacaccagcgacgcgttgctgtccgactggcccacctccaactgc
gccgccatccgccggagggcccctcccgtggaccccgagattctgcgctccatgaagatg
gtcggcttcatcggctacgcccccaaccctcgcaccaaactgcgcaaccagatgccctac
aagctgaacgaggcggatggggaggcggacggctactcacaggtgcccgagtcgcccatt
gggagggaggaggagccgcacctctacatggtgcccaagaagtacaggaaggtgactatc
aagtattctaaacttggcctggaggattttgatttcaagcattacaacaagaccatgttt
gcaggactggagacccacattcccaacgcttactgcaactccatgatccaggtgctttac
ttcttggagccagtgcgccgctccatccagagccacctgtgccagaaggagttctgcctc
gcctgcgagctgggattcctcttctacatgctcgatctctccaaaggggacccgtgccag
gccagtaacttcctgcgtgctttccgcaccattccggaggcgtcggcccttagtctcatc
ttggcggactccgacgaggcaacgggcaaagtgaatctgggtcaactcatccaaagctgg
aatcgtttcatcctcacacagctgcaccaggagatgcaggagcaagagggcatgccagcc
taccgcagcataactggcagcgcgcaggcctccagcgagtcggtggtgagccaattgttc
ggcacagagttggacaactgtagcacgtgccgctgtgggaaggaaacgtcgcgagtttcc
tcctcgctgctcttcacgctgcaccacccggacaccagcaaagatgagcctgggaagttg
tatgaatttgtggagctgcttcgcagaagcatttgtttggaccagagcacccaggcgtgg
tgtgaggtgtgcgaaaagtaccagcccacggtgcagaccaggaagctgcgccgactgcct
gacgtgctagttataaactgccaggtcaactctccaaaggactgtgagttctggaggaat
cagtccgagatcgcctaccgcagactcgtctccaaggaggaggccgagggcaccaaggct
cacccccccgccaagatccccgaatggcccatggcagccgaggggttggagctgggttcc
aacctggatgagatgaagaacgtgtggattcccttcgcctttcgcaccaagctcgcggaa
gacggcagcctggacatcacgccctggagcgaactcgacaaggtggaggacggcgaggat
gatgggggcggaagggtgtaccacctggcggcgtccgtggcacatgtgctggaccagcgc
accgggggaaacctgatggcgcacgtgcgtgttggtgaaacctatcaccatcggaaggag
ggtgtcacacacttccagtggtatctctttaacgactttctcattgaacctattgataaa
tttgaagccgtgcagtttgacgtgagctggaagatcccgtgcgtgttttactttgtacgg
caagacctcaactccaagtacaatgtatcaatcaagaatccaatcgagtcgagtgtgctg
ctggcggaggcgtctctggccaggaagcagcgcaagcggaacgccaccttcatgccactg
cagatctcggagctgccgcacaagggagacctggtcggcctcgacgccgagtttgtcacc
ctcaatcaggaagaagcggagcttaggagcgatggaacaaagtcgaccatcaaacccagc
cagatgtcggtggcaaggatcacgtgcgtgcgcgggcagggcgcccacgagggcattccc
ttcattgacgactacatctctactcaggagcaggtcgtggactacttgacccagttttcg
ggcatcaaaccaggagacttggatgctaaggtctcatccaaacacctgaccaccctcaag
tccacatacctgaagctgcgcttcctcatcgacaatggagtcaagtttgttgggcacggg
ctgcgcaaggacttccgtgtcatcaacctcatggtcccaaaggaacaagtcatcgacacg
gtcatcctcttccacatacccaggaagagaatgatttctttgaggttcctggcctggcat
ttccttgagctgcacatccaggcggagacgcacgacagcatcgaggacgccaacaccgcg
ctgcagctctacaggaagtacctggcgctcagtaataacggtcacgacgtcgacggcttc
cggaaaacgctcaagcagctgtacgaggagggacgcaagcgtgactggaaggtccccgag
tag
DBGET
integrated database retrieval system
