KEGG   Paenibacillus mucilaginosus KNP414: KNP414_05585
Entry
KNP414_05585      CDS       T01550                                 
Name
(GenBank) DNA polymerase LigD, polymerase domain-containing protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pms  Paenibacillus mucilaginosus KNP414
Pathway
pms03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pms00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KNP414_05585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pms03400]
    KNP414_05585
Enzymes [BR:pms01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KNP414_05585
DNA repair and recombination proteins [BR:pms03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KNP414_05585
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: AEI44109
UniProt: F8FLI2
LinkDB
Position
complement(6178996..6179901)
AA seq 301 aa
MTDERGIVQVDGVEVEISRPDKLLWPEPGITKLIYLQKLAALSPYLLPYCRDRHLTTRRF
PHGVQGKFFYQKNAPRGRPDYVRTHLYEGVEYVNLDSLPVLLWLGNLAALEFHPSFETVH
GEEPQEWVIDVDPEREGDPRLMEAAARVGEALEGMGLRSFPKTSGASGVQVVVPLTEGHT
FEDLHRVGGFLARFLAEKFRTLFTVERLLKEREGRIYLDYVQVAAGKSMAAPYTPRATPE
ATVSTPLTWDEVKTGVSPKAFHLLSIEKRLAEKGDLLAQAERQSLAPILKFLEKRPAALG
R
NT seq 906 nt   +upstreamnt  +downstreamnt
atgacggacgaacgcggcatcgttcaagtggacggtgtggaagtggagatctcccgcccg
gacaagctgctgtggccggagcccggcatcacgaagctgatttacctgcagaagctggcg
gccctgtcgccttatctgctgccgtactgccgggaccggcatctgacaacacggcggttc
ccgcatggggtgcagggcaagttcttctaccagaagaacgctccccgcggcaggcccgat
tatgtgaggacccatctctatgaaggggtggagtatgtcaacctcgattcgctgccggtg
ctgctgtggctcggcaacctggcggcgctggagttccatccgtccttcgagacggtgcat
ggcgaggagccgcaggagtgggtcatcgacgtggatcccgagcgggagggcgacccccgt
ctcatggaggcggccgcccgggtcggagaggcgctggaagggatgggcctgcgttcgttc
cccaagacctccggagcctcgggcgttcaagtcgtggtcccgctgacggagggacatacc
ttcgaggatctgcaccgggtcggcgggtttctcgcccgctttctggccgagaaattccgt
accctgttcacagtggagcggctgctgaaggagcgggaagggcggatctacctcgactac
gtgcaggtggcggcgggcaaaagcatggcggcaccttatacgcccagggcgacgccggaa
gccacggtatcaacgcccctgacgtgggacgaagtgaagacgggcgtctccccgaaggcg
ttccatctgctctcgatcgagaagcggctggccgagaagggcgacctgctcgcacaggcg
gagcggcagtcgctggcgccgattctgaagtttctggagaagcgcccggctgccttgggg
agatag

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