Podarcis muralis (common wall lizard): 114597838 Help Entry 114597838         CDS       T06059                                  Symbol XRN1 Name (RefSeq) 5'-3' exoribonuclease 1   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism pmua  Podarcis muralis (common wall lizard) Pathway pmua03008   Ribosome biogenesis in eukaryotes pmua03018   RNA degradation Brite KEGG Orthology (KO) [BR:pmua00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     114597838 (XRN1)   09123 Folding, sorting and degradation    03018 RNA degradation     114597838 (XRN1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pmua03019]     114597838 (XRN1)    03009 Ribosome biogenesis [BR:pmua03009]     114597838 (XRN1)    03016 Transfer RNA biogenesis [BR:pmua03016]     114597838 (XRN1)    03036 Chromosome and associated proteins [BR:pmua03036]     114597838 (XRN1) Messenger RNA biogenesis [BR:pmua03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      114597838 (XRN1)   mRNA degradation factors    5'-3' decay     5' exonucleases      114597838 (XRN1) Ribosome biogenesis [BR:pmua03009]  Eukaryotic type   Pre-60S particles    RNases     114597838 (XRN1) Transfer RNA biogenesis [BR:pmua03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     114597838 (XRN1) Chromosome and associated proteins [BR:pmua03036]  Eukaryotic type   Gene silencing    piRNA pathway     114597838 (XRN1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer Motif Other DBs NCBI-GeneID:  114597838 NCBI-ProteinID:  XP_028587031 UniProt:  A0A670IMH2 LinkDB All DBs Position 5:complement(72385601..72425944) Genome browser AA seq 1768 aa AA seqDB search MGVPKFYRWISERYPCLSQVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTVYLSGHETPGEGEHK IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKSQRACA PEETTFHLLHLSLMREYIDYEFSPVKDKISFTYEVDRIIDDWILMGFLVGNDFIPHLPHF HINHDALPLLYRTYMDILPKLGGYINESGHLNLPRFEKYLTKLSDFDREHFSEIFLDLKW FESKVGNKYLNEAAGIAAEESRMQKKRKAQENAMCLAALEKTDNGTVASLKTSLEDEPED DDLFETEFRQYKRTYYMTKMGVEVVSDAFLADQAECYVQAIQWILHYYYHGVQSWSWFYP YHYAPYLSDICNISELKIHLDLGKPFMPFEQLLAVLPAASKDLLPKCYQHLMTGEESPII EYYPTEFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKFLTTEEKQRNRHSECLMYF YDKDAEFQYLSPWPEKFPSIERCRAKHKAMSLDVWRVDIAQNKITKLDMERLYFCGFPTL KHINHKFYLKKSGVQVFQQSSHGENMLLEIMVSDDSEELNAENVASLVLGKSIFVNWPHL EEARAVAVSDGETKFQLEEPPGTQKLYMGNAAPPTKATFVRDKEQNIWVKEIQGISEHYQ RRKGVIINETSAVVYAQLLTGRRYQLNQSGEVYLEKQWSKQVLPFAYQTIVRDIKAFDSR FSSLKTLDDLFPLGCTVFMLGSPYYGCTGEVQDSCDVILEGRIRVVFNIPCEPQLDALIQ NQHKYSVKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGEHKANVGLNLKFNKK NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERTPELFSYLAKNGQEDIFYEDDIWPGEEEN GAEKVQEIIAWLKAHPVSALSRSSCDLQILDMAIVEKIEEEVEKCKQRKSNKKVRVTVKP HLLFRPLEQQHGIIPDRDADYRLFDRVVNVRECFSVPLGLRGTVIGIKGASRESDVLYEV LFDEEFHGGLTIRSSPGRGYRIPASALINLSYGNRSETGNQKLTAIVKPQPAVSPYNSYS PESFSVSTQKAHQGGLNHSPRSLFVPTRQVNGRQHNNLKVETQGNSNSLQKGAYLSSNQK YKAQDKQDDEFCSIWQSLQSSGKSQSAQHDRHEKGGILPQYIKLNTGGQFCKPGFNESSF KGQQRKQESFRKSKDDSKGPRTDSQTHKGSNKQNFAGANKYSVKLLKRNEAPNEPVEPKS AVDSPSITEKNGSELEDILASLKIFKEKEVPRSYPKEPTNEEHLSPQSFAMKGTQMLKEI LKIDGSDTAEAKSVANEVSAPTCRQDSCVPASQHTSAKKMAAFMNKSPGTAGPQNTQGME VGGHPLLGPPNSLSTPVSELSRICSLLGMLQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQ CHSENEAKEKAALFALQQLSSLGMNFPLPPPPVFPNYQPMGALVPPGSIPPVFTQHTANL FPSPPHAFGPVPWGAPVPVHGKPYFPGSYPGNMPFAGTVPAGAHNQFIPLQVTKKRVASK TNVEPKEFPGSLQNVQLKNEQSSIDTTKMNPQDASSEHLRSHQAAPSFQEKMAPSSSVAS RKKSIPNVSTKRKPRKLAVNFGAPKSSE NT seq 5307 nt NT seq  +upstreamnt  +downstreamnt atgggagtgccgaaattttaccgttggatctcggagcggtacccttgcctcagccaggtg gtgaaggagcatcagattccagagtttgacaacttgtacctggacatgaatggtatcatt catcagtgttcacacccgaatgatgatgatgttcacttcagaatctctgaagacaagatc tttgctgatatatttcactatttggaagtattgtttcgcattattaaaccaagaaaggtt ttcttcatggcagtagatggagttgctccaagagcaaaaatgaaccagcagcgtggcaga cgttttaggtcagcaaaggaggcagaggacaaaataaagaaggcattagagaaaggagag actcttccgacagaagctagatttgattccaattgcattacaccagggactgaattcatg gccaggttgcatgaacatctgaagtattttgtaaatatgaagatttcaacagacaaatcc tggcaaggcgtaactgtctacttatcaggccatgagacacctggagaaggggaacataaa attatggaatttataaggtcagagaaagcaaagcctgaccacgatccaaacacaaggcac tgtctgtacggtttggatgctgacttgattatgcttggactgacaagtcatgagccacat ttttcccttttaagagaagaggtccggtttggtggcaaaaagtcacaaagagcgtgtgcc ccagaagaaaccacttttcatttactgcacttgtcattaatgagagaatatattgactat gaattctcaccagttaaagacaagatatcgtttacatatgaagttgacagaataatagat gactggatcttaatgggctttcttgttggaaatgattttatccctcatctacctcacttt catattaaccatgatgcactgccactgctgtatagaacatacatggatattttgcctaaa cttggaggttacattaatgaaagtgggcacctcaacttacctcgctttgagaaatacctt acaaaattgtcagattttgaccgtgagcatttcagtgaaatctttttagatctgaagtgg tttgaaagcaaagtgggcaataaatatctgaatgaggcagctggtattgctgcagaagaa tcaagaatgcaaaagaagcgcaaggctcaggaaaacgctatgtgcttggctgctttggag aaaactgacaatggaactgtagcatctttaaaaacttcgttagaagatgagccagaagat gatgatttgtttgagacagagtttaggcaatacaaaagaacatactatatgaccaagatg ggtgtagaagtagtctcagatgcctttctagctgaccaggcagaatgttacgtccaggca atacagtggatattgcactactactaccatggggttcagtcatggagctggttctacccc taccattatgcaccttacctctcagatatctgcaacatcagtgaactgaaaatccacttg gatttaggaaaaccattcatgccgtttgaacagcttctggcagtacttccagcagccagc aaggatttgctgccaaaatgctaccagcatttgatgactggtgaagagtctcccattatt gaatattatccaactgaatttaaaactgatctaaatggaaagcaacaagaatgggaagca gtggttttaataccatttattgatgagaaacgattgttagaagcgatggaatcctgcaac aagttcttgacaacagaagaaaaacaaagaaataggcacagtgaatgcctgatgtacttc tatgataaagacgcagagttccagtacctgtctccatggccggagaagttcccttccata gaaagatgccgtgcaaagcataaagctatgtctctggacgtctggcgtgtagatatagcc caaaataaaataacgaaattggatatggagaggctgtatttctgtggctttcctactctg aagcacattaatcataagttctatctgaaaaaaagtggggtacaagtttttcaacagagc agccatggagaaaatatgctactggaaataatggtttccgatgattcagaggaactaaat gctgaaaatgtagccagtttggtgcttgggaaatcaatatttgttaactggcctcacttg gaagaagccagagctgttgctgtatcagatggtgaaactaagtttcagttggaggagcct cctggaacacagaagctctatatggggaatgctgccccaccaaccaaagcaacatttgtt cgagataaagaacagaatatctgggtgaaagaaatccaaggaatttcagaacattaccag agaagaaaaggagtaatcataaatgaaacatctgcagttgtttatgcgcaattgctaact gggcgtagataccagttaaatcaaagtggtgaagtgtatttggagaagcagtggtccaag caagttctaccttttgcataccaaacaattgtcagggatataaaggcctttgattcccgc ttctccagtctcaaaactttggatgacctgttccctctgggatgtacagtcttcatgctg ggatcaccttattatggctgcacaggagaagtacaggattcatgtgatgttatcttggaa ggcagaattcgtgttgttttcaacattccatgtgaacctcagctggatgccttaatacag aatcagcataaatattctgtgaagtacaatcctggatatgtattggccagtcgtcttgga gtgagtggctatcttgtttcgagatttacgggaagcatttttattggaagaggatcccgg agaaatccacatggagagcataaagcaaatgtggggttgaacttaaaattcaataaaaag aatgaagaggtccctggctataccaagaaagttggaaacgagtggatgtattcctcagct gtagagcaactccttgctgaatatctggaaaggaccccagaactttttagttacctagcc aaaaatggtcaagaggacatattctacgaagatgacatttggccgggtgaagaagagaat ggtgccgagaaggttcaagaaatcattgcgtggctaaaggctcatcctgtcagtgccctc tctcgttcctcttgtgatttgcaaattttggatatggctattgtcgaaaagattgaagaa gaagtagaaaagtgcaagcaaaggaaaagcaataagaaagtgcgtgtgacggtgaaacct cacttgttattcaggcctttagaacagcagcacggaattataccagatcgagatgcagac tatcgactgtttgaccgtgttgttaatgtgagagagtgtttttccgttccccttggactt cgtggcactgtgataggaattaaaggagccagcagagaatctgatgttctgtatgaagta ctgtttgatgaagagtttcatggaggcttaacaataaggagctcgcctggcagagggtac cgcattccagccagtgccttaatcaacctttcttatggtaatcggtctgaaacaggaaat cagaagctaactgccatagttaaacctcagccagctgtgagtccctacaactcatattca cccgaatcattttctgtatctacacaaaaagcacatcaaggaggtctcaaccattctcct cgctccctctttgttccaactcgacaagtgaatggaagacagcataacaatctcaaggtt gaaacccaaggcaattccaattccctccagaaaggagcatatttaagcagcaatcagaaa tacaaagctcaagataagcaagatgatgaattttgcagcatatggcaatcattgcagagc tctggaaagtctcagtctgcccaacatgataggcatgagaagggtggaattttacctcaa tacataaagctaaatacgggtggccagttctgcaaaccaggcttcaatgagagtagcttc aaaggccagcaaagaaaacaggaatctttcaggaagtctaaagacgactctaaaggtcca agaactgacagccaaacacataaaggatcaaataaacagaattttgcaggtgctaataag tatagtgtgaagctattgaagaggaatgaagcccccaatgagccagtagaaccaaagtct gcagttgacagtcccagtataactgaaaagaacggatctgaacttgaagacattttggcg tctttgaaaattttcaaagaaaaagaggtgccacggtcatatcccaaggaaccaactaat gaagaacacttgtctccacagtcttttgctatgaaaggaacacagatgctcaaagaaatt ttgaagatagatggttctgacacagcagaagcaaagtcagtggcaaatgaagtgtctgct ccaacttgcaggcaggattcttgtgtgcctgcctcacaacataccagtgccaaaaagatg gctgctttcatgaacaaatcccctggcactgcaggaccgcagaacactcagggcatggag gttggaggccacccacttcttggaccaccaaactcattatccactccagtatctgagctt tctcgtatctgttcccttcttggaatgctgcagcccgatttctcatttcttagaacacca cagacgatgacagtttgtcaagtaaagctatccaatggcttattagtacacggacctcaa tgtcactctgaaaatgaagctaaggagaaagcagcactttttgctttgcagcaattgagc tctctcggcatgaactttcctctgccaccaccgcctgtatttccaaattatcaacccatg ggagctcttgtgcctcctggatccattcctccagtcttcacgcagcacaccgctaatttg tttccttcaccacctcatgcgtttggcccagtgccatggggagcaccagttccagtccat gggaaaccttactttcctggttcctatcctgggaatatgccttttgcgggcactgtacca gctggtgcacacaatcagtttatacccttgcaggtaactaagaaaagggttgccagcaag actaatgttgagccaaaggagttcccaggttctcttcaaaatgtgcagttaaagaatgaa cagtcaagcatcgacactacaaaaatgaacccacaggatgcttcttcagaacatttaagg tctcatcaagctgctccatctttccaagagaaaatggctccttcgagctcggttgcatct cgtaagaaatcaataccaaatgtgtctaccaagcgaaagcccagaaaactggctgtcaat tttggtgcacccaaatcttcagaataa

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