Prunus mume (Japanese apricot): 103326213
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Entry
103326213 CDS
T03196
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103326213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103326213
03016 Transfer RNA biogenesis [BR:
pmum03016
]
103326213
Enzymes [BR:
pmum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
103326213
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103326213
Transfer RNA biogenesis [BR:
pmum03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103326213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
PAP_NTPase
TUTase
Polbeta
Nrap_D2
DNA_pol_B_palm
DZF_N
Motif
Other DBs
NCBI-GeneID:
103326213
NCBI-ProteinID:
XP_008226638
UniProt:
A0ABM0NLN2
LinkDB
All DBs
Position
LG3:11942990..11949414
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AA seq
538 aa
AA seq
DB search
MEEPATQGFLYETLPALSLPTANQSPPPDDLEPYSVFRNEVTLSTPQCAPVDTAAPDFFS
LDVGADEAEPNWVSPSRTLAAEPRTPLHQYEPTTPALEVEPKLESGWFRGHSKFKSPMLQ
LHKEIVDFCEFLSPTPEEQEARTSAVERVSQVIKYIWPRCKVEVFGSFKTGLYLPASDID
VVIMRSGIPTPQQGLQALSRALSQMGLAKKIQVIGKARIPIIKFVEKTSGIAFDISFDIE
SGPKAADFIQDVVSKWPPLRPLCLILKVFLQQRELNEVYSGGLGSYALLTMLMAMLHSHR
ECQASSEQNLGVLLVNFFDFYGRKLNTSDVGVSCKGAGTFFKKSVKGFITKGRPFLIAIE
DPQAPENDVGKNSFNYFQIRSAFSMAYTTLTNPKVILCLGPNRSILGTIIRPDPMLVERK
GGPGLVAFDSLLPGAGKPLQLEHDGQEFMCNWQLDDDDDPLPRGDDSAGGGSGRSSGKKR
KASFKEKSGKKGKENGEVGRRENGSKKEKTRRDENSSRKEKGKMKKIRRRRHSQDNAN
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcctgcaacacaaggctttctctacgaaaccctaccggcgctctctcttccc
accgccaatcaatctccgcctcccgatgacctcgaaccctactccgttttccgcaacgag
gttactctctccactccccaatgcgctccggtggacaccgccgctcccgatttcttctca
ctcgacgttggtgccgacgaagccgagccaaattgggtctcaccgtctcgtacccttgca
gccgagccaaggacgccgcttcaccaatacgagccgacgacgccggctcttgaagtcgag
ccaaagctcgagagcggctggtttaggggccatagtaaattcaagagccctatgcttcag
cttcataaagaaattgtggacttttgtgagtttctctctccaactccagaagaacaagag
gcacgcacttcagcagtagaacgtgtctctcaggttatcaaatatatatggcctcggtgc
aaggttgaagtttttgggtccttcaagacgggtttatatcttcccgctagtgatattgat
gttgtcattatgaggtcaggcataccaacaccacagcaaggattgcaggccctttctagg
gcattgtcacagatgggattggcaaaaaagatacaggtgattggaaaggcacgtattcct
attattaagtttgtagaaaaaacaagtggcattgcctttgacataagttttgatatagaa
agcggaccaaaagctgcagattttatccaggacgtggtatctaagtggcctcctttgcga
ccattatgtttaatcttaaaagtatttttacaacagagagaattaaatgaggtgtactct
ggtggattaggttcttacgccctccttacgatgctcatggcaatgttgcatagccacaga
gaatgtcaagcttcttccgaacaaaacttgggagttcttttggtaaacttctttgatttt
tatggacgcaaattgaatacttcagatgttggtgtatcgtgcaaaggggcagggaccttt
tttaaaaagagtgtcaaagggttcataaccaaaggacgaccatttcttattgccatcgag
gatccccaggcaccagagaatgacgttgggaagaactcattcaactattttcagattaga
tcagctttttcaatggcttatactacattgacaaatcctaaggtcatcctgtgcctaggc
ccaaacaggagcattctcggtaccataattagacctgatcctatgttggtggaacgcaaa
ggaggtcccgggctagtagcttttgatagcttacttcctggagcagggaaaccacttcag
ctagagcatgatgggcaggagtttatgtgcaattggcagttagatgatgatgatgatccc
ctgccgcggggagatgattctgctggaggcggtagtgggcgatcatcgggaaagaagagg
aaggcttcttttaaagagaagtcaggtaagaagggaaaagaaaatggtgaagtggggagg
agagaaaatggctcaaagaaagagaagactaggcgtgatgaaaatagctcaaggaaagag
aagggaaaaatgaagaagattaggagacggagacattcccaagataatgccaattga
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