Prunus mume (Japanese apricot): 103331693
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Entry
103331693 CDS
T03196
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103331693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103331693
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103331693
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103331693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
103331693
NCBI-ProteinID:
XP_008232562
UniProt:
A0ABM0P0C5
LinkDB
All DBs
Position
LG5:14149341..14168855
Genome browser
AA seq
2394 aa
AA seq
DB search
MLKFSPTTASQIRFLLQSLNDANFDSVLLELSQFTEYGIEGSILLLQTCLGHLTNYGTDL
KNVALERVLSSVFKYLLDRPNFTTVFCESLRNTEINEGILENFSNALHLSVCEKIAIGLA
LSDSENPDSRTCGKNFCMAQIQKLCENPVAMNSSEQIQNTVMFLQRSEGLSKHVDSFMQM
LSLLQLKDDSLFVLTPLLSDELRDANFLSNVGLFHESGENDFDAILAEMEKEMSMGDIMK
ELGYGCTVDSSQCKEILSLFLPLTEFTISKILGMIACTHAGLEDNQNTFSTFRLALGDST
LSDMPMLNTWNIDVLVDTIKQLAPGTNWIRVMENLDHEGFYIPNQEAFSFFMSVYQHVCQ
EPFPLHVICGSVWKNTEGQLSFLRHAVSAPPEVFTFAHSVRQLAYIDAVHGHKLQLGHAN
HAWLCLDVLDVLCLLAERGHALAVRSMLEYPLKHCPEVLLLGMAHINTAYNLLQYEVSFT
VFPMIIKNSMGSGMINHLWHINISLVLRGFVDAHNSDPDSMARILDICEELKILSSVLEM
IPSPFSIRLAALASRKEFIDLEKWLSNNLNTYKDTFFEECVKFLKEIQFGGSQDFSTRPF
QHSGAVSNLYVDTAATFSKVLKAHVGLITSSQLTEEMERLSVTIMDSNPRLQNGGTTESS
TDGYADDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSVKREQSIFECMIANLFEEYR
FFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQ
FVDRLIEWPQYCNHILQISHLRSTHSELVAFIEQALARISSGHSDSDGSNHASAHHHGPS
QASSGNVELNGSSILHTGQQLSSPLQLQQRHESSLDDRHKASTSSNDIKPLLSSAVQPSV
IPLGDAPSIQKSQSAVSAPAMLSSSSPGFVRPSRGVTSTRFGSALNIETLVAAAEKRETP
IEAPASEVQDKISFIINNISVANVEAKSKEFTEVMKDQYHPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKGLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLGVDLKEITPSSLLKDRNRELEGNPDFSNKDVGASQPQMV
AEVKSGIISPLNQVDLPLDVAPSSGSHTHLLPQYGTPLHLPPGTFNEDEKLAALGLSDQI
PSAQGLLQATPSQSPFSVSQLPTQIPNIGTHVIINQKLTGLGLQLHFQRVVPIAMDRAIK
EIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIFNAAHLMVASLAGSLAHVTCKEPLR
SSISTQLRNSLQGLNIASDLLEHAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQL
SLRRKRDGVGATFFDTNIYTQGSMGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSSQ
NSHVLPAGTPASGQLNTGYSAGPGSKFDAVSRPLDEGIEPNSALHLSASSIHVGVGDGVS
QQSSENDSVIGSFPAAASAPELQSVESSDAVKESGVSSQPLPSPAVTERLGSNISEPSLN
TRDALDKYQIVAQKLEALVTSDARDVEIQGVIGEVPEIILRCVSRDEAALAVAQKVFKGL
YENASNHIHVGAHLAILTAIRDVCKLVVKELTSWVIYSEEERKFNKDITVGLIHSELLNL
AEYNVHMAKLIDGGRNKPATEFSISLLQTLVIEESKVISELHNLVDALAKLAAKPGSPES
LQQLVEMVKNPASNVAAPSAINVGKEDKARQSRDKKAPVHSPVNREDFSNVESVEPDPAG
FREQVSMLFAEWYRICELPGANDAACAHFILQLHQNGLLKGDEMTERFFRVLTELSVAHC
VSSEVMNPGTLQTPQQVQSLSFLAIDIYAKLVFSILKGSNKLFLLTKILTVTVRFIQKDA
EEKKASFNPRPYFRLFVNWLLDLGSLDPVVDGANFQILSAFANAFNALQPVKVPTFSFAW
LELVSHRSFMPKMLAGNGQKGWPLIQRLLVHLFQFMEPFLRNAELGVPVHFLYKGTLRVL
LVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEIS
QSPRILSEVDATLKLKQMKTDVDEYLKTRQQGSSFLTELKQKLLLPSNDVALAGTRYNVP
LINSLVLYVGMQAIQQLQSRTPHAQSTQSVPFAVYLVGAALDIFQTLIVDLDTEGRYLFL
NAIANQLRYPNTHTHYFSFIVLYLFAESNQHEIIQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPRYQFWNRAFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWVSESAH
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttttcgccgaccaccgcaagccagattcgctttctcctccaaagcctcaac
gatgccaactttgactctgtgctcctagagctctctcagtttactgaatatggaattgag
ggaagcattttgctgctccagacctgtctgggtcatctcactaattacggaacagacttg
aagaatgtggcactggaacgggttctttcctcagtttttaaatatcttcttgacagacct
aatttcactacagtgttttgtgagtccctaagaaatacagagatcaatgaaggaattcta
gagaatttctcgaatgcattacacctgtctgtatgtgagaagattgccattggtcttgcg
ttgtcagattctgaaaacccagatagcaggacatgtggcaagaacttctgtatggctcag
atccagaagttgtgtgaaaatcctgttgcgatgaattcttctgagcaaattcagaacact
gttatgttcctccagcggtctgagggcctttccaagcatgtggattcctttatgcagatg
ttatctttattacagctgaaagatgacagtttgtttgttctaactccattgctttcagat
gagcttcgtgatgccaattttttgagcaatgtgggtttgttccatgaaagtggagaaaat
gattttgatgctattttagcagaaatggagaaggaaatgagcatgggagatataatgaag
gaattaggttatggatgcacagttgattcatctcagtgtaaagagattttatcccttttc
ttaccactcactgagtttactatctcaaaaatacttggcatgattgcctgtactcacgct
ggtctcgaggacaatcagaatacattttcaaccttccggttggcacttggtgacagcact
ttgtctgatatgcctatgttgaacacctggaatattgatgtccttgtagatacaatcaag
caacttgctcccggcaccaactggatacgggttatggaaaatttggatcatgagggattt
tacattcctaatcaggaggctttctcttttttcatgtctgtatatcagcatgtgtgtcag
gagccctttcccctccatgtcatctgtgggtctgtctggaagaataccgagggtcagcta
tcctttcttagacatgctgtatcagcaccacctgaagtgtttacctttgctcattctgtt
aggcagctggcctatattgatgctgtgcatggccataagcttcaacttggacatgcaaat
catgcttggttgtgtcttgacgttttggatgtactgtgtctactagctgagaggggtcat
gctcttgcagttcgatcgatgcttgagtatccgcttaaacactgtcctgaagtcctgctt
cttgggatggcacatataaatactgcatacaacctgctgcaatatgaagtgtcttttact
gttttccccatgataataaaaaattccatgggcagtggcatgattaaccacctctggcat
attaacatctcgctggtgctgcggggattcgttgatgctcacaatagtgatccagatagc
atggctagaatattggatatctgtgaagagctgaagattctgtcatctgtcttagagatg
attccttccccttttagtatcagactggcggctcttgcttccagaaaagagtttatagac
cttgagaagtggttgagtaataatttgaatacatataaagatactttctttgaggagtgc
gtcaagttcttgaaggagattcaatttggtggatcacaggatttttccaccagacctttc
caacattctggtgctgtgtcaaatctttatgtggacactgctgctacattctcgaaggtt
cttaaagctcatgttggcttgattacctctagccaacttactgaggagatggaaagattg
tctgtaacaattatggattctaatccaaggctgcagaatggtggcaccacagagtcatca
actgatggatatgcagatgatattgaagcggaagcaaactcttacttccatcaaatgttt
tctggtcagttgacaattgattcaatggtccaaatgcttgcccgattcaaggaatcttct
gtaaaaagggaacagtcaatttttgagtgtatgattgccaatctgtttgaagagtacaga
ttcttccccaagtatcctgaaagacagctcaaaattgctgcagttctctttggttctgtc
atcaagcaccagcttgtaactcatctgactcttgggattgctctgcgtggtgttttagat
gcattacgcaagcctgcggattcaaaaatgtttgtgtttggaactaaggctttggagcag
tttgtggatcgtctgattgagtggccgcagtattgcaatcacattcttcaaatatcacat
ctgcgtagtactcattcagagctcgtggctttcattgaacaggctcttgctaggatttca
tcgggccattcagactcagatggaagcaaccatgcttctgctcatcaccatggtcctagt
caagcttcctcaggaaatgtggagttaaatggttcgagcatcttacatactgggcagcaa
ctatcatctcctctccagcttcaacagagacatgaaagctctcttgatgaccgtcataaa
gcctcaacttcatccaatgacataaagccacttttatcttctgctgtgcaaccttcggtt
attcctttaggcgatgctcctagtattcaaaagtcacaaagtgcagtcagtgctccggca
atgttgtcttcttcttcccctggttttgttcgtccttcacgaggagttacttctacaagg
tttggctctgctttgaacatcgaaacattagttgctgctgctgagaaaagagaaactccc
attgaggctccagcatcagaggttcaggacaagatatcatttataattaataatatttca
gttgctaatgttgaagctaagtcaaaggagtttacagaagtaatgaaagatcaataccat
ccttggtttgcacagtatatggttatgaaaagggcaagcattgagccaaattttcacgac
ttgtacctgaaatttctggacaaagttaattctaagggtttgaataaggagattgttcaa
gctacttatgagaactgcaaggttcttcttggatcagagcttataaaatcaagctcagaa
gagcgctcattgttaaaaaatttagggagctggcttgggaagcttacaattggaaggaat
caagtcttaagggctcgtgaaatagatcccaagtctttgattatagaggcatatgagaaa
gggttgatgattgcagttataccctttacttcaaagattctggagccatgccaaagtagc
ctggcataccaaccaccaaatccctggacaatgggtattcttggattacttgctgagatc
tattcaatgccaaacttaaagatgaacctgaagtttgacatagaggttctattcaagaat
cttggcgtggatttgaaggagataacaccaagttctcttctcaaggatcgcaacagagaa
cttgaagggaatcctgatttctctaacaaagatgttggagcatcccaaccacagatggtt
gctgaagtgaaatctggaatcatatctccactaaatcaagttgatctaccacttgatgtt
gcgccatcttctgggagccatacacatctattacctcagtatggcactcctcttcatctt
ccacctggtacctttaacgaggatgagaagcttgctgctttagggttgtctgatcagatt
ccttctgctcaaggactattacaagctactccgtcacaatcaccgttttctgtgagtcag
cttcccactcaaatacctaatatcggaactcacgtaatcattaaccagaagctaactggc
ttgggattgcaactgcattttcagagagtggttccaatcgcaatggacagagctatcaaa
gagatagtatctggtattgttcagcgcagtgtttctatagctacccagaccactaaagag
cttgttttaaaggattatgccatggaatcagatgagacgagaatatttaatgcagctcac
ttgatggttgcgagtttggcaggaagtctagctcatgtgacatgcaaggaacctttgcgc
agttcaatatcaactcagctcaggaattcccttcagggattaaatattgccagtgatctt
ctagaacatgctgtacaacttgttactaatgataatctggatcttggctgtgcagttatt
gaacaggctgcgactgataaggccatacaaacaattgacggggaaatagctcaacagctc
tcattaagaaggaagagagatggtgttggtgcaaccttttttgatactaacatctatact
caaggttccatgggcgttgtgccagaggcccttcgccctaaacccggccatttgtccctt
tctcaacagcgagtttatgaggactttgttcggcttccctggcagaaccagtctagccag
aactcgcatgttcttcctgctggtactccagcatcaggacaacttaacacaggctactca
gcaggccctggaagcaaatttgatgcagtttctcgtccgctggatgagggcattgaaccc
aattcagctctgcatcttagtgcttcctctattcatgtcggggtgggtgatggtgtttcc
cagcagagttctgaaaatgattctgtcattggttcatttcctgctgctgcctctgcccca
gagctacaatcagtagagtcgtctgatgctgtaaaggaatctggagtttcttcacagcca
ctaccttcacctgctgtaactgagcgtcttggaagtaacatttcagaaccttctctcaac
acgagggatgcattggataaataccagattgtggcacaaaagttggaagctctggtaact
agtgatgctagagatgtagaaattcagggagtcattggtgaagttcctgagattatactc
aggtgtgttagtcgagatgaggctgccttggctgtggctcaaaaggttttcaagggttta
tacgagaatgcatccaaccatattcatgtcggtgctcatcttgcaatcctgactgccatt
cgtgatgtttgcaagcttgttgttaaggagctcactagttgggttatttattccgaggag
gagcggaagtttaacaaagatattactgttggccttattcacagtgaattgctaaacctt
gcagagtacaatgttcatatggccaaacttattgacggtggcaggaataagcctgcaact
gagttttccatttcccttctccaaactttggtgattgaagaatctaaagttatatcagaa
cttcataatcttgttgatgctttggctaagcttgctgcaaagcctggatctcctgagtca
ctacagcagctggttgaaatggtgaagaatcctgcttctaatgtggctgctccatctgct
attaatgttggaaaggaggacaaggccagacaatctagagataaaaaggcacctgttcac
tctcctgtgaacagggaagactttagtaatgtggagtctgtggaacctgatcctgctggt
ttccgtgagcaggtgtcaatgctgttcgctgagtggtaccggatttgtgaacttcctggt
gcaaatgacgcagcttgtgcccatttcatcttacagttgcatcaaaatggtctgctgaag
ggggatgaaatgacagagcggtttttccgcgtcctcacagagctttctgttgcacattgt
gtgtcttctgaggtgatgaatccaggcacattgcaaacaccacaacaagtgcagagtctc
tccttccttgccattgatatctatgctaaacttgtcttctcaattttgaagggatcgaat
aaactatttctcttgactaagattttaacagtcacagtgagattcattcaaaaggatgca
gaggaaaagaaagcatctttcaatccaagaccatattttagattgtttgttaactggctg
ctggaccttggttctctggatcccgtggttgatggtgctaactttcagatcttgtcagca
tttgcaaatgcatttaatgctttgcagcctgttaaagttcctacattcagctttgcatgg
ctcgagttggtgagtcataggagttttatgccaaaaatgctcgctgggaatggccagaag
ggctggccccttatccaacgtttgctggtacacttgtttcaattcatggagccatttttg
aggaacgctgaactaggagttccggttcatttcctgtataaaggcacacttagggtgctg
ctagttctacttcatgatttcccagaatttctctgtgattatcactttaccttctgtgat
gttattcctccaagctgcattcaaatgcgaaatattattctcagtgcatttccccgtaat
atgaggctgccggatccatctactccaaacttaaagattgatttgcttgctgaaatcagt
cagtctccacgtattctttccgaggttgatgcaactctaaaattgaagcagatgaaaact
gatgtggacgagtatctcaagacaaggcaacaaggttcttcatttctgactgaactgaag
caaaaattgctacttccatcaaacgatgttgccttagctggtactcgttacaacgtaccc
ctcatcaactcccttgtgctttatgttgggatgcaggctatccaacagcttcagtctaga
acacctcatgcacagtctacccaaagtgttccattcgctgtctatttggtgggtgctgct
ttggatattttccagactctgatagtggacctagatactgaagggcgctaccttttccta
aatgcgattgcaaaccaactgcgctatccaaacactcatacccattacttttcgttcatt
gttctttacttgtttgccgaatcaaaccagcatgaaattatccaggagcaaatcacaaga
gtactgttggaacgtctgattgttaatcggccgcatccatggggtcttctgattaccttc
attgagcttatcaagaaccctagataccagttctggaaccgagctttcatacggtgtgcg
ccagagattgaaaaactctttgaatctgtctcaagatcttgcggcggtccaaaacctgtg
gatgaaagcatggtctcaggttgggtatcggagagtgcacactga
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integrated database retrieval system
