Prunus mume (Japanese apricot): 103336595
Help
Entry
103336595 CDS
T03196
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103336595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103336595
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
103336595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_11
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_8
TPR_19
TPR_9
TPR_12
TPR_7
TPR_15
TPR_20
BTAD
Motif
Other DBs
NCBI-GeneID:
103336595
NCBI-ProteinID:
XP_008237875
UniProt:
A0ABM0PD34
LinkDB
All DBs
Position
LG7:complement(27448..36005)
Genome browser
AA seq
1180 aa
AA seq
DB search
MQETEQEKECELRRLEGCIEAHPDDPSLRFELGVLLWEEWDAKEKAAEQFVVAAKLKPEI
EKGGAFRYLGIYYAGLDSQSHSQRALKCFQKAVSLNPDDSLSGEALCDLLDQQGKESLEV
AVCREASQKSPRAFWAFQRLGYLLLHQNKCSEAVHGLQHAIRGYPTSPHLWEALGLAYQR
LGRFTAALKSYGRAIELEGTRIFALLESGNIFLMLGSFRQGVEAFQQALEISPKSVSAHY
GLASGLLCLAKECNNLGAYRWGATVLEEASKVAWMCTQLAGNMSSIWKLHGDIQLTYAKC
YPWMEEDHSLEFDVEAFDNSILSWKHTCCLTAKTAKCSYQRALHLSPWQANIYADIAVTS
DLVDSFDNSTGHELSAWQPSEKMALGALLLEGDNSEFWVALGCLSDHNALKQHALIRGLH
LNVSLAVAWAYLGKLYRKQGEKQFARQAFDCARSIDPSLALPWAGMSADFHARESAAGEA
YESCLRAVQILPLAEFQMGLAKLALGSGNLSSSQVFGAIRQAMQRAPHYPECHNLTGLVY
EAQSNYQSAAASYRLARCAITNLSGCGRKSHMTDISINLARSLSRAGNALDALQECEDLK
KEGLLDVEGLQIYAFSLWQLGKTELALSVARNLAVSVSTMEQTSAAASVVFICRFLYHIS
GLDSAINSILKMPKQLFQSSKISFIVSAIHALDRSNRLESVVSSSRYYLKSHEEITGMHF
LIALGKLIKHGSEHRLGYQSGIDHLRKALHMYPNSSLLRNLLACLLLCSEEWNDTHIATR
CCDIDTTKPSKGGLKSAYEILGAGAVACYAVGNCSPKFSYPTCTYQCLNEPGAIQQLQKC
LRREPWNQNIRYLLVLNLLQKAREERFPCHLCIILERLISVALSDEVYHNTGMSYEYKKF
QLLLCASEICLQRGNLTGCINHAKNASSIMLPDDYLFFAHLLLLRAYALECDTVNLQKEY
IRCLELKTDHHIGWICLKFIEYRYELQSDLDILESSFKECSKERMNSWNMWRALFILVQG
LISIWSQDIISAEQFFAQACSLAGDESSLLLCHGATCMELSRQGCSSQFLSLAVRSLTKA
QEGPLIPLPIVSALLAQAAGSLGSKEKWEKNLRLEWPTWPQEMRPAELFFQMHLLARQTK
ASSDSSRVEFCQSPEKWVLRAIHTNPSCMRYWKVLQKLVE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaacggaacaagaaaaggaatgtgagctgcgacgcttggaggggtgtatagag
gcccatccagatgatccctcccttcgcttcgaactcggagtgttgttgtgggaggagtgg
gatgccaaggaaaaagcggcagaacaattcgtagtagcagcgaaattgaagcctgagatt
gagaagggaggggcattcagatatctagggatttattacgcaggtctagactcccagtcc
cacagccagagagctcttaagtgcttccagaaagccgtctctcttaatcctgatgactcc
ctctctggggaagccttgtgtgatttgttggaccagcaaggaaaggagagcttggaggtg
gctgtgtgccgggaggcttcccaaaaatcccccagggccttttgggctttccaaagactc
ggttacttgctactccatcaaaataaatgctctgaagctgtccacggtcttcaacatgcc
atccgaggctatcctacctctccacatctctgggaggctcttggccttgcctaccagcga
ctaggcaggttcactgctgctctcaagtcttatggaagagccattgaattggagggtaca
agaatctttgctttgcttgaaagcggaaacatctttttgatgcttggttcctttcgacag
ggagttgaggcatttcagcaagcattagagatttctcccaaaagtgtctctgcgcactat
gggcttgcttctgggctgctgtgtttggcaaaggaatgcaataatttgggagcatataga
tggggtgctacagtgctagaggaggcatctaaagttgcctggatgtgtactcaattagct
ggaaatatgtcatctatttggaagctgcatggtgatatacaacttacttatgcaaaatgt
tatccatggatggaggaggaccacagtttagagtttgatgtggaagcctttgataattcc
atcctttcatggaagcatacctgctgtttgactgcgaaaactgccaagtgctcttatcag
cgagctttgcacttatccccatggcaagctaatatatatgctgacatagcagtaacttca
gatctcgtagactcttttgataacagtactggacatgaattaagtgcttggcagccatcc
gagaagatggctttgggagccctgttactcgagggtgacaattctgagttttgggtagca
ttgggatgtttgtctgatcataatgcattgaaacaacatgctctaatcaggggattgcat
ttgaatgtatctctagctgttgcgtgggcatacttagggaagctgtacagaaaacaaggt
gagaagcaatttgcaaggcaagcatttgattgtgctaggagtatagatccttcactcgcg
ttaccatgggctggcatgtcagctgattttcatgcaagagagtctgcagctggagaagct
tatgagagctgcttacgagctgtgcagatattgcctcttgctgaattccaaatgggtctt
gcaaaacttgctcttggttcagggaatctgtcatcttcgcaggtctttggagccatcaga
caggccatgcagcgtgcacctcactatccggaatgccataatttaactgggctagtctat
gaggcacaatccaattatcagtctgccgctgcttcctatagactagcacgctgtgcaatc
accaatttgtcaggctgtggtagaaaatctcatatgacggatatatcaatcaatttggct
cgatcacttagtagggcagggaatgctctagatgctttgcaggaatgtgaagatttgaag
aaagaagggttgcttgatgtggaaggtttgcaaatatatgctttctccttgtggcaactt
ggtaagactgaactggccctctctgtggcaagaaatctggcagtgagtgtctctacaatg
gaacaaacatctgcagctgcctctgttgtttttatctgtagattcctgtatcatatttct
ggactggattcggcaatcaatagcattctgaagatgccaaagcaactgtttcagagttca
aagatcagtttcatagtatctgctattcatgctctagatcgaagtaatcggcttgagtct
gttgtgtcaagcagccgttactatcttaaatctcatgaagagataactggaatgcacttt
ttgatagcacttggtaaactaataaaacatggatcagaacaccgtttgggatatcaaagt
ggaattgatcaccttaggaaagctcttcacatgtatcctaacagtagcttgttaaggaac
cttcttgcttgtcttttgttgtgcagtgaagaatggaatgatacccacattgcaactagg
tgttgcgacatagacactactaagccaagtaaaggcggtttaaaatcagcatatgaaatt
cttggtgctggagcagtcgcttgctatgctgttggcaattgcagtcctaagttctcttac
ccaacatgcacataccagtgcctgaatgaacctggagccatccagcaactacagaaatgt
ttgcgccgagaaccatggaaccagaacataagatatctgcttgttctcaatttactgcag
aaggcacgtgaagagagatttccttgccatctttgtattatacttgagcggctaataagt
gtagctctttctgatgaagtttatcataatacgggcatgtcttatgaatataagaaattc
cagcttctactttgtgcttctgagatctgtttgcaacgtggtaatctaactggctgtatc
aaccatgccaaaaacgcttcatcgattatgcttcccgatgattatcttttctttgcacac
ttgctattactccgtgcctatgccttagaatgtgacactgtaaaccttcaaaaagagtat
ataagatgcttggagctcaagacagatcatcatattggttggatatgtctaaagttcatc
gaatatcgttatgaattgcaaagtgatttggatattttagagtctagcttcaaagaatgc
tcaaaggagcgaatgaattcatggaatatgtggagggctctattcattctggtgcaaggc
ttgatatctatatggagccaggacattatttctgctgaacagttttttgcacaagcttgt
tcattggcgggtgatgagagcagcctcctgctttgtcatggtgccacctgtatggagctt
tctcgccaggggtgttcttcgcagtttttatcacttgctgtacggagtctcaccaaagct
caagaaggtcctctcattcccttaccgattgtctcagcattgctagctcaagcagctgga
agtcttggttcaaaagagaagtgggagaaaaacctccgtcttgaatggcctacttggcct
caagaaatgaggcctgcagagctgttctttcagatgcatttgcttgcaagacagacgaaa
gctagttcagactcttccagagttgagttttgtcagagtccggagaagtgggttcttcga
gcaattcacacgaacccttcttgtatgagatattggaaggttttgcagaagctcgtggaa
tga
DBGET
integrated database retrieval system
