Prunus mume (Japanese apricot): 103339257
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Entry
103339257 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
103339257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103339257
Enzymes [BR:
pmum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
103339257
DNA repair and recombination proteins [BR:
pmum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
103339257
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
103339257
NCBI-ProteinID:
XP_008240754
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Position
LG8:4900410..4905974
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AA seq
548 aa
AA seq
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MNQIQPLQLGFKTFLSLTRFAVAPRNLRTGALASLTRLRATQGVARRPVSAKTTKPMFEE
NKKDKTFKESMGTNPSPHKPIVKDDGAESNVVEIESFKNEPARIEAMTVQQLRTTLRNAG
VSAKGRKFELVAALKCFLEKKKDGEGSLVIEEQVASTCVENASEKTEAETSSDGDQVQNV
PVSEVGELQRYKRRLNHSSVKSETVIGYSKVATKKEKLSIESEDLSGHKLSRTRKKTSSE
TINFDVKTDDKVAEPWTVLAHKKPQKDWIPYNPRTMKLPPLAKDTKFLKLMSWNVNGLRA
LLKLEGFSALQLAQREDFDVLCLQETKLQEKDVEDVKRSLIDGYENSFWTCSVSKLGYSG
TAIISRVYCLSSXXQXSLSDHDSEGRIITAEFDSFYLVTGYVPNSGDGLRRLSYRINEWD
PSLSNYMKELEKSKPVILTGDLNCAHQEIDIYNPAGNKRSAGFTDEERQSFGSNFLSRGF
VDSFRRQHPGVVGYTYWGYRHGGRKFNRGWRLDYFLVSESIADKVHDSYILPDITGSDHC
PIGLVLKL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaattcaacctctgcaattagggttcaaaacatttctcagtctcacccgcttt
gcagtagctccaaggaatttgagaactggagcattggcttctcttactagattacgagca
actcaaggagtggctagaagacccgtttccgctaaaacaacaaagcccatgtttgaggaa
aataagaaggataagacattcaaagaatcaatgggtacaaacccaagccctcataaacct
attgtcaaggatgatggtgctgaaagcaatgtggttgagattgagagttttaagaatgag
cctgcgagaatcgaggcaatgacggttcaacaactcagaacaacactgagaaatgctggg
gtttctgccaaaggccgtaaatttgaacttgtggctgccttgaagtgctttttggaaaag
aagaaagatggtgaaggttccctggtaatagaagaacaagtagcctccacttgtgttgaa
aatgcatcagagaaaactgaggctgaaacatcatctgatggagaccaagttcagaatgtc
cctgtttcggaggttggtgaacttcaacgttacaagagaaggttaaaccattcgtcagtt
aagagtgaaactgtgataggctatagcaaggttgcaacgaaaaaggagaagttgtcaatt
gagtcagaagacctttcaggtcacaagctctcaaggacaagaaagaaaacatcttcagaa
actatcaattttgatgtcaaaactgatgataaagtagctgagccatggacagttcttgcg
cataagaaacctcagaaagattggattccttataatcctagaaccatgaaacttccaccg
cttgctaaggatactaaatttttgaagcttatgtcttggaatgtcaatggtttaagggca
ttattgaagttagagggattctctgctttgcagctagcccaaagggaagattttgatgta
ctgtgtttgcaggagaccaaactgcaggagaaggatgttgaagatgtgaaaaggtctctg
atagatgggtatgagaatagcttctggacatgtagtgtttccaagcttggttattcagga
actgcaattatttcaagggtatactgtctttcttcatgatgacaataaagcctatcagat
catgatagtgaggggcggattataacagcagagtttgattcattttatctggtaactgga
tatgttcctaattctggagatggtttgagaagactgtcatacaggattaatgaatgggat
ccatctctcagcaattacatgaaagagctggaaaagtcaaaacctgtcattttaacaggt
gatctgaattgtgctcatcaagagatagatatttataacccagctggaaacaaaagaagt
gctgggtttacagatgaagaaaggcaatcctttggttcaaacttcttatccaggggattt
gtggatagctttagaaggcaacaccctggtgttgttggctatacttactggggttatcga
catggtggacgcaaatttaatagaggctggcggcttgactacttcctcgtctcggaatcc
atagctgacaaggttcatgactcatacattctgccggatataactggcagcgatcattgt
cctataggccttgtacttaagctgtag
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