Prunus mume (Japanese apricot): 103342295
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Entry
103342295 CDS
T03196
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103342295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103342295
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
103342295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
103342295
NCBI-ProteinID:
XP_008244129
UniProt:
A0ABM0PT89
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MPLTTTMSEEAMKVDQPQPPRTEALQNLTKGPLSSSISKLSGSSRGIPSNQDFYFYRNFD
EFKVPIEHITEQSQLMLGSVGSSAPIWGKKMAFPQDLDDAYDWLVNVNDEVLERFDSSVD
EFKRIRKEAEEPKRPMIADFDSENGFQLVCGKKKKGPSGSASANGDSIQVSSVKVATKDK
KTVGTKPKVPFHIPTIRRPQEEFNILVNNSNQPFEHVWLQRSEDDQRFLHPLEKLSVLDF
VDTDVGDVEPVKPPSLESTPFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGMTC
LMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIMWLQRDFGIYICNL
FDTGQASRVLKMERNSLEYLLHQLCGVTANKEYQNADWRLRPLPEEMVRYAREDTHYLLH
MYDLMRTMLCLMPKESENLDTPLVEVYKRSYDICMHLYEKELLTENSYLHIYGLQGAGFN
AQQLAIVSGLCEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLKRLVKSKHPYIE
RNLASVVSIIGHSMQNAAFFEPAVEHLKLGHAGMATEDNILANEGSEAVLPDESASNSIN
GDISAASPASPPHKMEDTELGCGASELVRGGQESSLEHPGENGKGKIECGSNTSVLPRQN
IVPWQSREANSNACLLDSTKVTGVSVQVQKKPSCAFSSLLGSGVPKRKFDADRKNKEDKL
EQIRSSMNFPFHSFTGSSQQSKPIIEPSATSSEIPHSEGPLTVSPDRSNLDDIITLENDS
DVGEPINGCSETRNENDSVASALGRDGEDEPMSLSDLSSSFQKCFQSRKQNRKPREVEKS
QESGGLQVKPFDYEAAKRGVIFGAKPVKEGGEGVRSLNSGGKKKSLGGRVSNDDGSKELA
QGRRRQAFPASGNRSATFR
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgccattgacaaccaccatgagcgaagaagccatgaaggtggaccaacctcagccaccg
aggaccgaagccctccaaaacctaaccaaaggtcctctctcctcgtcgatatccaagctc
tcaggctcatcgcgaggcataccttccaaccaagacttctatttctaccgcaacttcgac
gaattcaaggtcccgatcgaacatatcacagaacagtcgcagttaatgctcggctccgtt
ggctcttcggcgcctatttggggcaaaaagatggctttcccccaagacttggacgacgcg
tacgattggctggttaacgtcaacgacgaggtgctcgaaaggtttgactcctcggtggac
gagttcaagaggatcaggaaagaggcagaggagcccaagcggccgatgattgcggatttt
gactcagaaaatgggtttcaattggtctgtgggaagaagaagaaggggcccagtggctcg
gcgagtgctaatggtgattcgattcaggtctcgagcgtgaaggtggctaccaaggacaag
aagactgtggggacgaagcccaaggtaccgtttcatataccgacaattcggaggcctcag
gaggagttcaacattttggttaataattcaaaccagccgtttgagcatgtttggttgcag
agaagtgaggacgatcagcgttttcttcatccccttgagaagctttctgttctggatttt
gttgacactgacgttggggatgttgagcctgtaaaaccaccctcattagagtctacgcca
ttcaagcttgtggaggaggtcaaagatctgaaagagctggcagctaagctgcgtggtgtt
aatgaatttgcggttgatttggaacacaatcaatatcgatccttccaaggaatgacttgc
ttgatgcaaatttctactagaactgaagattttatagtagatactttgaagcttagaatt
catgttggtccatatcttagggaagttttcaaagaccctgccaagagaaaggtgatgcat
ggagcagatcgagatatcatgtggctccaacgtgattttggcatttatatctgcaatttg
tttgatactggccaggcctcaagagtattgaaaatggagagaaatagtttggaatatctt
ttacatcagttatgtggtgttactgctaacaaagaataccagaatgcagattggagatta
cgccctcttcctgaggagatggtcagatatgccagagaagatacacactatctgttgcac
atgtacgatttaatgagaacaatgttatgtttgatgccaaaggaatcagaaaacttggac
actcctttagtagaggtttacaagcggagttatgatatctgcatgcatctgtatgagaaa
gagcttttgacagaaaattcctatctccatatatatgggttgcaaggtgctggtttcaat
gctcagcagcttgcaattgtttccggtctttgtgagtggcgggatgttgttgctcgtgca
gaggatgaaagtactggctatatattaccaaacaaaactcttcttgaaattgctaaacag
atgcctgtcactactagcaagttaaagcgattggtgaaatcaaagcacccgtacattgag
cgcaatcttgcttctgtggttagcatcattgggcattctatgcaaaatgctgcttttttt
gagcctgcggtcgaacatttgaaattgggacatgcgggtatggcaactgaagataatata
ttggcaaatgaaggatctgaagccgtcttacctgatgagtctgcaagcaattcaattaac
ggtgatatatctgcagcttcacctgcttctccgccacataaaatggaggatactgaactt
ggatgtggtgcctcggaacttgtaagagggggacaagaaagctctcttgagcatcctggt
gaaaatgggaaaggaaagattgaatgcggtagcaacacttctgtgcttcctagacagaat
attgttccgtggcaaagcagagaagcaaacagcaatgcctgtttattagattcaacaaag
gttactggagtaagtgttcaagtgcaaaagaagcctagctgtgcctttagttccctgttg
gggagtggagttccaaaaagaaagtttgatgctgatagaaagaacaaggaggacaagttg
gagcaaattaggtcgtcaatgaactttcctttccactcatttacgggaagtagtcagcaa
tcaaagccaatcatcgaaccatcagctacaagttctgaaattccccactctgaagggcct
ctcactgtatcacctgacaggtctaatttagatgatatcataacactggaaaatgattca
gatgtgggtgaaccaataaatggttgctcagaaacgagaaatgagaatgattcagtggca
tctgctttggggagggatggagaagatgaacctatgtctctctctgatttgtcctcaagc
ttccaaaaatgttttcagtcacgtaagcaaaacaggaaacccagagaagtggagaaatcc
caagaatccggtggtttgcaggtgaagccttttgactatgaagcagcaaagagaggggtt
atctttggagctaagccggttaaagaaggtggggaaggtgtaaggagcctgaattcagga
gggaagaaaaaatctttaggcggtagagtctcaaatgatgatgggtcaaaagaactagca
caaggtagacgacgacaagcttttccagcaagtggaaatagaagtgcaacgtttcgttaa
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