Persephonella marina: PERMA_0427
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Entry
PERMA_0427 CDS
T00870
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
pmx
Persephonella marina
Pathway
pmx02020
Two-component system
pmx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PERMA_0427 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PERMA_0427 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmx03021
]
PERMA_0427 (rpoN)
Transcription machinery [BR:
pmx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PERMA_0427 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_23
MarR
HTH_12
HTH_IclR
HTH_38
Sigma70_r4_2
HTH_Crp_2
HTH_ABP1_N
Linker_histone
HTH_3
MarR_2
HTH_Tnp_ISL3
DNA_pol3_delta_C
VASP_tetra
Motif
Other DBs
NCBI-ProteinID:
ACO03062
UniProt:
C0QU52
LinkDB
All DBs
Position
385339..386643
Genome browser
AA seq
434 aa
AA seq
DB search
MLKQTLNLKLQNKLVLTLSLKQQLSLLLLPTVELKETIKQELEENPFLEEIINLEPDYEP
IKDLSKYYDEEETPLLSRIAYRPTLYDTLDFQIDLEFEGIEKDIAHEIAGNLDEKGLLAV
SIDEIASKLNVKQEIVEEVRKRFIRLEPTGIGALTLEEALIIQYEERFGKDPLVERILRE
DVWNLNDMDYLSEKYGVDRKEIEEKVFYIKMLRPYPTFNYDLETTEYVEPDVYVYDRGDS
FEIKVNESGIPKLKLTSQYRRLISDKSLSPEVRKFLEDKLQKAMGIMKGIELRRENLYRI
TELLVNYQADFLRKGKEYLKPLTLKDIASKLDLHESTVSRIVSSKYMQTDKGLIPLKAFF
ASKLQTSGGDISTEKVKYMICELIENEDKKKPLSDQAIANILKDRYGIKIARRTVTKYRE
ELNIPDSRTRRTKP
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagcagacattaaatctaaaacttcagaataagcttgtacttacattaagcctg
aagcagcagctttctcttttactgctccctacagttgagcttaaagagacaataaagcag
gagcttgaggaaaaccctttccttgaagagataataaatttagagcctgattatgagcct
ataaaggatctatcaaagtactatgatgaggaagaaacgcctcttttaagcaggatagca
tacagacctacactgtacgacacacttgatttccagatagaccttgagtttgaaggtatt
gaaaaggatatagcccatgagatcgccggaaatctggatgagaaagggttactcgcagtt
tctattgatgagatagcatcaaaactgaatgtaaaacaggagattgtagaggaagtaaga
aaaagattcataagacttgaacctacagggataggcgcccttacacttgaggaggcctta
ataatccagtacgaggagaggtttggaaaggatccccttgtagagagaatactcagggaa
gatgtctggaatcttaatgatatggattatctatctgaaaagtatggggttgacaggaag
gagattgaggagaaggtattttacataaagatgctgagaccatacccgacatttaattac
gatcttgagacaacagagtatgttgagcctgatgtttatgtttacgatagaggggacagc
tttgagataaaggtgaatgagtcaggtattccaaaactgaagcttacatcccagtacaga
agacttatatctgataaatccctttctccggaagttaggaagttccttgaggataaactc
cagaaggctatgggtataatgaaaggtatagagctgagaagggaaaacctttacagaata
acagagcttcttgtgaactatcaggcagactttttgagaaaagggaaggagtaccttaaa
cctttaacacttaaagatatagcatcaaaacttgatcttcatgaatcaactgtgagcagg
attgtatcaagtaaatatatgcagacagacaagggacttatacctttaaaggcatttttc
gcatcaaaactccaaacttcaggtggagatatttccacagaaaaagtaaaatatatgatc
tgtgagcttatagaaaatgaggacaagaaaaagccgttaagtgatcaggctatagcgaat
atattaaaggatagatacggaataaagatagcaagaagaactgtaacaaaatatagagaa
gaattaaatataccggattcaagaacaaggaggacgaagccatga
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