Pseudomonas mendocina ymp: Pmen_4544
Help
Entry
Pmen_4544 CDS
T00510
Name
(GenBank) Exonuclease, RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pmy
Pseudomonas mendocina ymp
Pathway
pmy03030
DNA replication
pmy03430
Mismatch repair
pmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pmen_4544
03430 Mismatch repair
Pmen_4544
03440 Homologous recombination
Pmen_4544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmy03032
]
Pmen_4544
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_4544
Enzymes [BR:
pmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pmen_4544
DNA replication proteins [BR:
pmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pmen_4544
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pmen_4544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DUF5998
Motif
Other DBs
NCBI-ProteinID:
ABP87291
UniProt:
A4Y125
LinkDB
All DBs
Position
4981771..4982478
Genome browser
AA seq
235 aa
AA seq
DB search
MSERAAQDWPQLFASLAESSRDPRLRAYYGAGCVTADTPLAEVPLVALDVETTGLDPREH
AIVSLGLVPLNLQRIRCSEARYWVVKPAGELSAESVTFHHITHSDIRHAPRLASVLDELL
EALAGKVVVAHYRHIERSFLDQALRRHLGEGLIFPIIDTMELEARLHPKRRVSWWNRLRG
RRPLSIRLADSRLRYGLPLYSAHHALTDALACGELLQAQVAKHYPPHTPVGALWS
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcgcgcggcccaggactggccgcaactcttcgccagccttgccgaaagcagc
cgcgacccacgcctgcgcgcctactacggcgccggctgcgtcaccgccgatacgcccctg
gccgaggtgccgctggtggcgctggacgtggaaaccaccgggctcgacccgcgtgagcac
gccatcgtcagcctcggcctggtgccgctcaacctgcagcgcatccgctgcagcgaggcg
cgctactgggtggtcaaacccgctggcgaactgagcgccgaatcggtgaccttccaccac
atcacccacagcgatatccgccacgccccgcgcctggccagcgtactggacgaactgctc
gaagcactggccggcaaggtggtggtggcgcactaccgccacatcgaacgcagcttcctc
gaccaggccctgcgccggcacctgggcgaagggctgatcttccccatcatcgacaccatg
gagctggaagcccgcctgcatcccaaacgcagggtcagctggtggaatcgtctgcgcggc
cgccgcccgctctccatccgcctggccgacagccgcctgcgctacggcctgccgctatac
tcagcgcaccatgcgctgaccgatgccctggcctgtggcgagctgctgcaggcgcaagtg
gcgaagcactacccgccgcatacgccggtcggcgcgctctggagctga
DBGET
integrated database retrieval system