KEGG   Pseudomonas mendocina ymp: Pmen_4544
Entry
Pmen_4544         CDS       T00510                                 
Name
(GenBank) Exonuclease, RNase T and DNA polymerase III
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
pmy  Pseudomonas mendocina ymp
Pathway
pmy03030  DNA replication
pmy03430  Mismatch repair
pmy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pmy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pmen_4544
   03430 Mismatch repair
    Pmen_4544
   03440 Homologous recombination
    Pmen_4544
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmy03032]
    Pmen_4544
   03400 DNA repair and recombination proteins [BR:pmy03400]
    Pmen_4544
Enzymes [BR:pmy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Pmen_4544
DNA replication proteins [BR:pmy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Pmen_4544
DNA repair and recombination proteins [BR:pmy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Pmen_4544
SSDB
Motif
Pfam: RNase_T Rv2179c-like DUF5998
Other DBs
NCBI-ProteinID: ABP87291
UniProt: A4Y125
LinkDB
Position
4981771..4982478
AA seq 235 aa
MSERAAQDWPQLFASLAESSRDPRLRAYYGAGCVTADTPLAEVPLVALDVETTGLDPREH
AIVSLGLVPLNLQRIRCSEARYWVVKPAGELSAESVTFHHITHSDIRHAPRLASVLDELL
EALAGKVVVAHYRHIERSFLDQALRRHLGEGLIFPIIDTMELEARLHPKRRVSWWNRLRG
RRPLSIRLADSRLRYGLPLYSAHHALTDALACGELLQAQVAKHYPPHTPVGALWS
NT seq 708 nt   +upstreamnt  +downstreamnt
atgagcgagcgcgcggcccaggactggccgcaactcttcgccagccttgccgaaagcagc
cgcgacccacgcctgcgcgcctactacggcgccggctgcgtcaccgccgatacgcccctg
gccgaggtgccgctggtggcgctggacgtggaaaccaccgggctcgacccgcgtgagcac
gccatcgtcagcctcggcctggtgccgctcaacctgcagcgcatccgctgcagcgaggcg
cgctactgggtggtcaaacccgctggcgaactgagcgccgaatcggtgaccttccaccac
atcacccacagcgatatccgccacgccccgcgcctggccagcgtactggacgaactgctc
gaagcactggccggcaaggtggtggtggcgcactaccgccacatcgaacgcagcttcctc
gaccaggccctgcgccggcacctgggcgaagggctgatcttccccatcatcgacaccatg
gagctggaagcccgcctgcatcccaaacgcagggtcagctggtggaatcgtctgcgcggc
cgccgcccgctctccatccgcctggccgacagccgcctgcgctacggcctgccgctatac
tcagcgcaccatgcgctgaccgatgccctggcctgtggcgagctgctgcaggcgcaagtg
gcgaagcactacccgccgcatacgccggtcggcgcgctctggagctga

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