Prevotella melaninogenica: HMPREF0659_A5300
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Entry
HMPREF0659_A5300 CDS
T01286
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pmz
Prevotella melaninogenica
Pathway
pmz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0659_A5300 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmz03021
]
HMPREF0659_A5300 (rpoB)
03400 DNA repair and recombination proteins [BR:
pmz03400
]
HMPREF0659_A5300 (rpoB)
Enzymes [BR:
pmz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0659_A5300 (rpoB)
Transcription machinery [BR:
pmz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0659_A5300 (rpoB)
DNA repair and recombination proteins [BR:
pmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0659_A5300 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
T4_y05I_C
Motif
Other DBs
NCBI-ProteinID:
ADK95954
LinkDB
All DBs
Position
I:416649..420458
Genome browser
AA seq
1269 aa
AA seq
DB search
MALENKPRVNFASVKNPYPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPIT
DTRNNFVLEFLDYYVDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFIQDVF
LGTIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQGVHANGTVLYSARIIPFKGSWIEF
ATDINNVMYAYIDRKKKLPVTTMLRAIGYESDRDILQIFDLCEEVKVNKKNMKAAIGRKI
AGNVMKSWTEDFVDEDTGEVVSIERNEVVVERETIITEDNVDQILDSSVSSILLHKDEDA
ASKYSIIFNTLAKDPSHSEIEAVNYIYRQLRNADAADDASAREVFQNLFFSDKRYDLGEV
GRYRINKKLNLETDMDVRVLTKDDIIEIIKYLISLINSNATVDDIDHLSNRRVRTVGEQL
ANQFSVGLARMNRTIRERMNVRDSEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNP
LAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYAK
INDLGFIVTPYRRVKDAKVDMDNKDVVFLTAEEEEEQIIGQGNAPLNADGTFIRDVVKCR
QDADYPVVTPDSVALIDVSPQQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDA
PIVGTGLEKQVCEDSRTMVTAEGDGVIEYVDATTIRILYDRTDDEEFVSFEPALKEYRIP
KFRRTNQNMVVDLRPICDKGQRVKKGDILTEGYATENGELALGRNLVVAYMPWKGYNYED
AIVISERMVREDVLTSVHVDEYSLEVRETKRGVEEFTADIPNVSEEATKDLDDNGIIRIG
ARVEPGDIMIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLF
SRAIKTRESKRQDKNILAKIDEEQEAKINDLKDLLVDKLLELTEDKVSEGVKDYSDAEII
TKGSKFTVAALKNLDYEGIQSNGWTDDEHTNLLIQKLIMNFIRKYKQMDAEMKRKKFAIT
IGDELPSGVLQMAKVYIAKKRKIQVGDKLAGRHGNKGIVSKVVRTEDMPFLEDGSPVDLV
LNPMGVPSRMNLGQIFEAILGAAGRKLGVKFATPIFDGAKLSDLKEWTDKAGLPNLCSTY
IYDGETGEKFDQPATVGITYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWAIEAFGASHVLQEILTIKSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHELR
GLGLSVKLD
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggcattagaaaataaacccagagtaaatttcgccagcgttaagaatccgtatccatat
ccggatttcctcgatgtgcagttgaagtctttccgtgacttcctacagctggatactccg
cctgaggaacgcaagaatgacggtttgtataaggtgttcgcagagaacttccctatcacc
gatacgcgtaataatttcgtccttgagttcctggattactatgttgacccaccaagatat
tctattgatgaatgtttggagcgtggcttgacatacagtgtacctttgaaggctaagatg
aagctgtattgtactgacccagatcatgaggatttcggtacatttattcaagatgtattt
ttgggtacaattccatacatgaccagcaatggtacttttgttatcaatggtgctgagcgt
gttgttgtttctcagttacatcgttctccgggtgtattctttggtcagggtgtccatgct
aatggtactgttctttatagtgcacgtatcattccatttaagggttcatggatagagttt
gctactgacataaacaatgtcatgtatgcttatattgaccgtaagaagaagttgcctgta
accacgatgcttcgtgctattggttatgagtctgaccgtgatattcttcagatttttgat
ctttgcgaagaggtaaaggtgaataagaagaatatgaaggcagctatcggtcgcaagatt
gctggtaatgtcatgaagtcttggactgaagacttcgttgatgaggatacaggtgaggtt
gtatctatagaacgtaatgaggttgttgtagagcgtgagactatcatcacagaagacaat
gttgatcagattcttgatagctcagtttcttcaatcttgttacataaggatgaggatgct
gcaagtaagtattctatcatcttcaacacacttgccaaagatccaagccactcagagatt
gaggcagtaaattatatttatcgtcagctgcgtaatgcagatgctgctgatgatgcaagt
gcacgtgaggtattccaaaaccttttcttctcagacaagcgttatgacttgggtgaggtt
ggtcgttaccgaatcaataagaagttgaatttggaaacggatatggatgtacgtgtactg
acaaaggatgatatcattgagattattaagtatcttatcagccttatcaattcaaatgct
acggttgatgatattgaccacttgtcaaatcgtcgtgttcgtactgttggagagcagtta
gctaaccagttctctgtcggccttgcacgtatgaatcgtactatccgtgagcgtatgaac
gttcgtgatagtgaagtgttccagccaacggatttgattaatgcaaagactatatcaagc
gtcattaactcattctttggaacgaacccattgagccagtttatggaccaaaccaaccca
ttggcagaggtaactcataagcgtcgtctttctgctcttggtcctggtggtctgtctcgt
gagcgtgcaggttttgaggtacgtgacgttcactatacccattatggtcgtctttgtcct
attgagtctcctgaaggtcctaacatcggattgatttcatcactctgtatgtatgctaag
attaatgatcttggctttatcgttacaccatatcgtcgtgtgaaggatgctaaggtggac
atggataataaggatgtagtcttcttgacagcagaggaggaagaagagcagattatcgga
cagggtaatgcaccattgaatgcagatggtacatttatccgtgatgttgttaagtgtcgt
caggatgctgattatccagtagttactccagactccgttgctcttatcgacgtatctcca
caacagattgcatctgtgtcagcaggtttgattccattcttggagcatgatgatggtcac
cgtgcattgatgggatgtaacatgatgcgccaggctgtccctttacttcacaatgatgca
cctattgttggtacaggtcttgagaagcaggtatgtgaggactcacgtactatggttact
gcagagggtgatggtgttatcgagtatgttgatgctacaacaatccgtattctctatgat
cgtacagatgatgaggagtttgtaagtttcgagcctgctcttaaagagtatcgcattcct
aagttccgtcgtactaaccagaacatggttgtagaccttcgaccaatttgtgataagggt
cagcgcgtgaaaaagggtgatattcttacagagggttatgcaacagagaacggtgagttg
gcattaggtcgtaaccttgttgtggcatatatgccttggaagggttacaactatgaggat
gctatcgttatttctgagcgcatggttcgcgaggatgtattgacctctgttcatgttgat
gagtattccctcgaagttcgcgaaactaagcgtggtgttgaggagtttactgctgatatt
cctaacgtaagtgaggaagctactaaggatcttgacgataatggtattatccgtattggt
gctcgtgttgagccaggtgatatcatgattggtaagatttctcctaagggtgaaagcgat
ccttctccagaagagaaacttctccgtgctatcttcggtgacaaggctggtgatgttaag
gattcttctttgaaggctaatccatcattgagcggtgttgttattgataagaaactcttt
agccgtgctattaagacacgtgagagcaagcgtcaagataagaatattcttgctaagatt
gatgaggagcaagaggcaaagattaatgatttgaaggacctcttggttgataagttgctc
gaactgactgaggataaggtttcagagggtgtaaaggactactctgatgctgagattatt
actaagggaagcaagttcactgttgcggcattgaagaacctcgattatgagggaatccaa
tcaaatggatggactgatgacgagcataccaaccttcttattcagaagttgatcatgaac
ttcatccgcaagtacaagcagatggatgctgagatgaagcgtaagaagtttgctatcact
attggtgatgaacttccatcaggcgtattgcagatggctaaggtttacattgctaagaag
cgtaagattcaggtgggtgataagcttgcaggtcgtcacggtaacaagggtatcgtatca
aaggttgtacgtacagaagatatgccattccttgaggatggtagtcctgtagacttggta
ttgaacccaatgggtgtgccttcacgtatgaaccttggtcagattttcgaggctatcctt
ggtgctgcaggtcgtaagttgggtgttaagtttgctactcctatcttcgatggtgctaag
ctctctgatttgaaggagtggacagataaggcaggtctgccaaatctctgttcaacctat
atctatgatggtgaaaccggtgagaagttcgaccagccagctacagtgggtatcacttac
ttcttgaagttgggtcacatggttgaggataagatgcacgctcgtagtatcggtccatac
tcattgattacacagcagccacttggtggtaaggcacagtttggtggtcagcgtttcgga
gagatggaggtctgggctattgaggccttcggtgcatctcatgttctccaggaaatcttg
acaatcaagtctgatgatgtagttggtcgttcaaaggcttacgaggctatcgttaagggt
gaaccaatgccaactccaggtattccagagtcactgaacgtgttgttacacgagcttcgt
ggtctcggtctcagtgtcaaacttgattaa
DBGET
integrated database retrieval system
