Pelagibacterium nitratireducens: V6617_03380
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Entry
V6617_03380 CDS
T11031
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnf Pelagibacterium nitratireducens
Pathway
pnf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6617_03380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnf03019
]
V6617_03380
03009 Ribosome biogenesis [BR:
pnf03009
]
V6617_03380
Enzymes [BR:
pnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6617_03380
Messenger RNA biogenesis [BR:
pnf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6617_03380
Ribosome biogenesis [BR:
pnf03009
]
Prokaryotic type
rRNA helicases
V6617_03380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
WWT33525
UniProt:
A0ABZ2I1F5
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All DBs
Position
complement(645517..647361)
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AA seq
614 aa
AA seq
DB search
MSSDTDHAPADLPASIHVALASALTAHGYTQLTPVQTEMLDPAHDEADLLVSAQTGSGKT
VAFGIAIASTLLGDAERFGPAQTPLGLIIAPTRELALQVQRELAWLYADAGIRIATCVGG
MDMRDERRALDRGAHLVVGTPGRLRDHITKRSLDLGALRAIVLDEADEMLDLGFRDDLEF
ILAASPEERRTLLFSATVPRAIADLAKTYQRDAVRVATTAATEQHADIDYQLMVVHRDER
EHAIINTLLTSDSTSALVFCHTREAVRHLAARLTNRGFAAVALSGELAQSERSSALQAMR
DGRAHVCVATDVAARGIDLPNLDLVIHADIPSNPATLLHRSGRTGRAGRKGVCVLVVAEH
RRKAAARVLAMAKLSATTVSAPTIADIEARYRRQILDAAVSAPMPEDHETEFVTELLGKV
SPEQLAVAFLRQQLASRPVPEETSSVSLAGDGPKSKRRDKRSEGGPAYDPMAPREPRGPD
MVGGVWFILSLGRKHRADPKWLLPMICKAGGVTKREVGSIKIDDTETRFEIAADKADEFA
QHLKRGTGLERGVTIAPAGRGPSKPPRAREGFEPKPKFEAKPKFKPRPKREAGPGDAPRP
AKTGSKGFGKKGRK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgatactgaccacgcgccggcggacctgccggcatcaatccacgttgcgctg
gcgagcgcgctcacggcccatggctacacccagctgacccccgtgcagaccgaaatgctc
gatcccgcacatgacgaggcggacctgctggtttcggcccagaccgggtcgggcaagacc
gtggcgttcggcatagcgattgcctccacacttctgggcgatgccgaacggttcggcccg
gcccagaccccgctggggctgatcatcgcgccgacccgcgaactcgccctgcaggtgcag
cgcgaactcgcctggctctatgccgatgccggcattcgcatcgccacctgcgtcggcggc
atggacatgcgcgacgagcgccgtgcactcgaccgtggtgcccatctggtggtgggcacg
ccggggcgactgcgcgaccacatcaccaaacgctccctcgatctgggcgccctgcgcgcc
atcgtgctcgacgaggccgatgaaatgctcgatctgggctttcgcgacgatctcgaattc
attcttgccgcttcgccggaagagcggcgcaccctgctgttttcggccaccgttccccgt
gccattgccgatctggccaagacctatcagcgcgatgctgttcgggtggcgacaacggca
gcgaccgagcagcacgccgatatcgactaccagctcatggtggtccaccgcgacgagcgc
gagcacgccatcatcaataccctgctcacatccgacagcaccagcgcgctggtcttctgc
cacacccgcgaggccgtacgccatctggcggcccggctgaccaatcgcggctttgcggcc
gtggcgctgtcgggcgaattggcccagtccgaacgctcgagcgccctgcaggccatgcgc
gacggacgcgcccatgtctgcgtcgccaccgacgtcgcggcgcgcggcatcgacctgccc
aatctcgacctggtgatccacgccgatatcccctcaaatcccgcaacgctgctacaccgg
tcgggccgcaccggccgggccggacggaaaggcgtttgcgtgcttgtcgttgccgaacat
cggcgcaaggcggcagcccgggtcctggccatggccaagctttcggcgaccacagtctct
gccccgaccatcgccgatatcgaagcacgctatcgccgccagatccttgacgccgcggtc
tccgcacccatgcccgaggatcatgaaaccgagttcgtgaccgagctattgggtaaggtt
tcccccgagcaactggccgtggccttcctgcgccagcaattggccagccggcccgtacct
gaggaaacctcgtcggtgtcccttgcgggcgacggccccaaatccaaacgccgcgacaag
cggtccgaaggcggcccggcatacgatcccatggctccgcgcgaaccgcgtggacccgat
atggtgggcggggtgtggttcatcctttcgctcggacgcaagcaccgggccgatccaaaa
tggctcttgcccatgatctgcaaggcgggcggagtgaccaagcgcgaagtgggatcgatc
aagatcgacgacaccgaaacccgcttcgaaatcgccgccgacaaggccgacgagtttgcc
cagcacctcaagcgcggaaccggtcttgaacgcggcgtcaccatcgctccggccggccgt
ggtccctcaaagccgccccgcgcccgcgaagggtttgagcccaagccaaaattcgaggcc
aaaccaaaattcaagccccggcccaagcgcgaagccggccccggcgatgcgccccgtccg
gccaagaccggatcgaaagggttcggcaagaaggggcgcaaatag
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