Candidatus Protochlamydia naegleriophila: PNK_0827
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Entry
PNK_0827 CDS
T04212
Symbol
cnpD
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pnl
Candidatus Protochlamydia naegleriophila
Pathway
pnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PNK_0827 (cnpD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnl03019
]
PNK_0827 (cnpD)
Messenger RNA biogenesis [BR:
pnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PNK_0827 (cnpD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
KH_PNO1_2nd
HDOD
KH_NusA_2nd
RHG29_45_N
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
CUI16452
UniProt:
A0A0U5JCB9
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All DBs
Position
cPNK:complement(992264..993823)
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AA seq
519 aa
AA seq
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MNETQIALYLLLFLIGSAIGALAFWAYHRFALGGVKRLSVDIINRAEQEATEMRRLNELG
IKQKQVEQQRDLEQVWQQERKKIQREDERLKQREDKLESRMNLVEKKLSDIEKREAVLIG
RKAQVDEEKRQATETHAKLVAVLEKASGLSSSEAKEMLLSRLTNEVKTDAANLIRRIKKE
AEEEAGKQASTIIATAINRLAVSCASESTVCTVAIPNEEMKGRIIGREGRNIRALERETG
INFIIDDTPGAVVLSGFDPVRKHVAKTALTELVQDGRIHPTRIEEVVEKATINVHKQIKQ
YGEDAALRAGAMNLHPEIINLLGKLKFRYSYGQNVLDHSLEVSHLMGLMAAELGLDIRLA
KRIGLLHDMGKAVTHEIEGSHAVIGHDLALKFGESKEVANGIGCHHHEMPPLTIEADLCS
AADAISASREGARIEAVEEYIKRLRKLEDIALEFAGVDKAYAMQAGREIRIVVLPDQIDD
AGVINLARDLTKRIEQELSYPGKIKVTVIREKRVVEYAV
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaactcaaatagccctttacctcctgctcttcctgattggcagtgctataggg
gctttagccttttgggcctatcacaggttcgcccttggcggggtaaagcggctttcggta
gacattattaaccgagcagagcaagaagccacagagatgagaaggctcaacgaacttggc
atcaaacaaaaacaagttgagcagcaacgggatcttgagcaagtttggcaacaagagcgg
aagaaaattcagcgcgaggatgagaggctcaagcagcgggaagataaactcgaaagccgg
atgaatctcgtcgagaaaaagctttcagacattgaaaagcgcgaggctgtcttaatcggg
cgcaaggcacaagtcgatgaagaaaaaaggcaggcgactgaaacgcatgccaaactcgtc
gccgtcttggaaaaagcctcgggtctcagttcgtctgaggccaaggaaatgctgctatca
agactgactaacgaggttaaaacggatgctgccaatctcattcgccgcatcaaaaaagaa
gcagaagaagaagctggaaaacaagcctctaccattattgccaccgccattaatcgttta
gcagtttcgtgcgcatctgaatctactgtatgcaccgtagccattccaaacgaggaaatg
aaagggcgcatcatcgggcgggagggacgcaatattcgcgccctggagcgagaaaccggc
atcaacttcatcattgacgacacccctggagccgttgtcctctcaggctttgatcctgta
agaaagcatgtagccaagactgccttaacggaactcgtgcaggatggccgcattcatcct
acgcgcattgaagaggtagtagaaaaagcgacgattaatgtgcacaagcaaatcaagcag
tatggggaagatgcggctcttcgcgcaggagcgatgaatttgcatccagaaatcatcaac
ttgcttggcaagcttaaattccgctatagctatggacaaaatgtactagaccattcgttg
gaagtttcccatttaatgggcctcatggcagccgagcttggcttagatatccgtttagca
aaaagaattggactcttgcacgatatgggtaaagccgttacccatgagattgaaggttcg
catgccgtcatcggacatgacctcgccctcaaatttggcgaaagcaaagaggttgccaat
ggcattggctgtcaccaccatgaaatgccgcctttaaccattgaagccgatctttgcagc
gcagccgatgccatttcagcctctcgagaaggagctcgcatcgaagctgttgaagagtac
atcaagcgattgagaaagctcgaagacatcgccttagaatttgccggggtcgacaaagcc
tatgctatgcaagcgggacgtgaaatacgcattgtcgtcctccccgatcagatcgacgat
gcaggcgtcatcaatctagctcgcgacttaactaagcgcatcgaacaagagctcagctat
ccaggcaaaatcaaagtcaccgtcatacgcgaaaagcgcgttgtcgaatacgcagtctga
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