KEGG   Polynucleobacter asymbioticus: Pnuc_1905
Entry
Pnuc_1905         CDS       T00502                                 
Name
(GenBank) Excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
pnu  Polynucleobacter asymbioticus
Pathway
pnu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pnu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pnuc_1905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pnu03400]
    Pnuc_1905
DNA repair and recombination proteins [BR:pnu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pnuc_1905
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Pnuc_1905
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_16 AAA_29 nSTAND1 RsgA_GTPase AAA_21 DnaJ_CXXCXGXG AAA_22 BCA_ABC_TP_C AAA_23 AAA_25 nSTAND3 APS_kinase Viral_helicase1 cobW
Other DBs
NCBI-ProteinID: ABP35117
UniProt: A4T053
LinkDB
Position
1983411..1986299
AA seq 962 aa
MNNEIKIRGARTHNLKNINLDIPREKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLQLMEKPDVDTIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPH
CPEHDLPLEAQSVSQMVDTVLSMPEDTKLMILAPVVSERKGEFVDLFQDLQAQGFVRFRV
RSGGGTANAAKAEIFEVDQLPTLKKNDKHSIEVVVDRIKVRPDIQQRLAESFETSLRLAD
GKAMIVDMDTGKEMIFSSKFACPVCSYSLQELEPRLFSFNNPMGACPSCDGLGHQSFFDP
KRIVAHPDLSLASGAIKGWDRRNQFYFKLLQTLAKHGGFDVEKPFETLNKKQQDLILLGS
GDVTIPFEYINERGKNSIREHAFEGIVANFERRYRETDSMTVREELSRYQNVQTCPECKG
SRLRKEARFVKVGDKKQSRAIYEISALPLKEAKEYFETLELKGAKREIADKIVKEIGARL
RFLNDVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL
IGTLKHLRDLGNSVLVVEHDEDMIRASDWVIDIGPGAGIHGGEVVAQGTPAEVEANLNSL
TGAYLAGREAIAVPEKRIPVSDRFLEIIGARGNNLQSVHAKIPVGLLTCVTGVSGSGKST
LINDTLHHAVAQHLYGSNAEPAAHDAIKGLEHFDKVISVDQSPIGRTPRSNPATYTGLFT
PIRELFAGVPASRERGYEAGRFSFNVKGGRCDSCEGDGVIKVEMHFLPDVYVPCDVCHGK
RYNRETLDIRYKGKNIHEVLSMTIEQAFEFFEAVPVVKRKLKTLLDVGLGYVKLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIQLLLTVIQTLKKQGNTIVIIE
HNLDVIKTADWIIDLGPKGGAGGGQIIATGTPEDVAKNELSFTGHYLAPLLTRKIVSSKK
KK
NT seq 2889 nt   +upstreamnt  +downstreamnt
atgaataacgaaatcaagatccgcggtgcccgcacccacaacctcaaaaacatcaatcta
gacatccctagagagaaactggtcgtccttactggcctctctggttcgggcaagagctca
ctggcttttgacaccctttatgccgagggtcaacgccgctacgttgaatccctctcagct
tatgctcgtcagtttttacaactcatggaaaaaccagacgtcgatacgattgaaggtctt
tcgcctgcgatttcaattgagcaaaaagcaacaagccacaaccctcgctcaaccgttggt
accgtcactgaaattcatgattacttgcgcttactctttgcacgtgcaggaacaccccac
tgcccagaacatgaccttcctttagaggcacaaagtgtctcgcaaatggttgataccgta
ttgtcaatgccagaagacactaagctcatgattcttgcgcccgtagtcagtgagcgcaaa
ggtgagtttgttgacctctttcaagatttacaagcacaaggctttgttcgttttcgcgtt
cgctcaggtggtggtacagccaacgctgctaaagcagagatttttgaagttgatcaatta
cctacgctaaagaaaaatgacaaacactcaatcgaagtagtggttgatcgaattaaagtt
cgtccagatattcaacaacgtttagcggaatctttcgaaacctccttacgcttagcggat
ggcaaggcaatgattgtggatatggacactggcaaagagatgattttctctagtaaattt
gcctgtccagtttgctcttattccttacaagaattagagcctcgcttattctcatttaat
aacccgatgggcgcctgcccttcctgcgacggcctaggtcaccagtccttctttgatcct
aagcgaatcgtagctcaccccgatttatcactagcttctggcgctatcaaaggctgggat
cgccgtaatcagttctacttcaaactccttcaaactcttgcaaagcatggtgggtttgac
gttgagaaaccgtttgagacattaaataagaaacagcaagatttgattttgcttggctct
ggtgatgtcaccattccatttgaatatatcaatgagcgtggcaaaaatagtattcgcgaa
catgcctttgaaggtattgttgccaactttgagagacgctaccgcgaaaccgattccatg
acggttcgcgaagaactctctcgctatcaaaatgtgcaaacttgcccagaatgtaaaggc
agtcgtttacgcaaagaagcacgttttgtcaaagtgggtgataaaaaacaatcacgcgct
atttatgaaattagcgctcttccactgaaagaagctaaagaatattttgaaacccttgag
ctcaagggtgccaaacgagaaatcgccgacaagattgtgaaagaaatcggtgctcgccta
cgctttttaaatgatgtcggcctcgattacctgtctttagagcgaagcgctgataccctt
tctggtggcgaagctcagcgtattcgactagcatcccaaattggctctggcctaacgggt
gtgatgtatgttttagatgaaccctctattggattacatcaacgcgacaatgatcgcctc
attggcaccctcaaacatttacgagatcttggtaatagcgttctcgtagttgagcatgat
gaagatatgattcgcgcctctgattgggtaattgacattggccctggtgccggcattcat
ggtggtgaggtcgttgctcaaggtacgccggcagaagtagaagcaaacttgaattcctta
accggtgcttacctggctggccgtgaggcaattgccgttccagaaaaacggattccagta
agcgatcgtttcttagaaattattggcgcacgtgggaataatttgcaatctgttcatgca
aagattccagtaggtttattaacttgcgtgactggcgtatcgggctctggtaaatccaca
ctcattaatgacaccttgcatcatgcagttgctcaacatttatatggctccaatgcagag
ccagcagctcatgatgcgatcaaaggcctagagcattttgataaagtcattagcgttgat
cagtcacctattggtaggacacctcgttctaatccggccacctatacgggcctgtttact
ccaatcagagaactctttgctggcgttcccgcatcacgtgagcgcggctacgaagccggg
cgcttctcctttaacgtaaagggtgggcgctgtgattcatgtgaaggcgatggcgtaatt
aaggtagaaatgcacttcttgccggatgtgtatgtgccttgcgatgtatgtcatggcaaa
cgttataaccgtgaaactctggatatacgctacaaaggcaaaaatatccacgaagtactt
tccatgaccattgagcaagcctttgaattcttcgaagcggtgccggtcgttaaacgcaaa
ctgaaaacactattagatgtcggcttaggttatgtaaagctgggacaaagtgctaccact
ctatcgggtggtgaagcgcaacgcgtcaagctatcgctagaactttctaagcgcgataca
gggcgcactctttacatcttggatgaacctacaacgggcctacatttccacgatatccaa
ctcttgttgactgttattcaaacactcaaaaagcaaggtaacacgatagtcatcattgag
cacaatctagatgtgatcaaaacggctgattggattattgatcttgggcccaagggtggt
gctggtggcggacaaattattgcaaccggaacccctgaagatgttgcaaaaaatgaactc
agtttcactggtcattatttagcacctttattgactcgaaagatcgtgagcagcaaaaag
aaaaaataa

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