Polynucleobacter asymbioticus: Pnuc_1905
Help
Entry
Pnuc_1905 CDS
T00502
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pnu
Polynucleobacter asymbioticus
Pathway
pnu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pnuc_1905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnu03400
]
Pnuc_1905
DNA repair and recombination proteins [BR:
pnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pnuc_1905
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pnuc_1905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_21
DnaJ_CXXCXGXG
AAA_22
BCA_ABC_TP_C
AAA_23
AAA_25
nSTAND3
APS_kinase
Viral_helicase1
cobW
Motif
Other DBs
NCBI-ProteinID:
ABP35117
UniProt:
A4T053
LinkDB
All DBs
Position
1983411..1986299
Genome browser
AA seq
962 aa
AA seq
DB search
MNNEIKIRGARTHNLKNINLDIPREKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLQLMEKPDVDTIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPH
CPEHDLPLEAQSVSQMVDTVLSMPEDTKLMILAPVVSERKGEFVDLFQDLQAQGFVRFRV
RSGGGTANAAKAEIFEVDQLPTLKKNDKHSIEVVVDRIKVRPDIQQRLAESFETSLRLAD
GKAMIVDMDTGKEMIFSSKFACPVCSYSLQELEPRLFSFNNPMGACPSCDGLGHQSFFDP
KRIVAHPDLSLASGAIKGWDRRNQFYFKLLQTLAKHGGFDVEKPFETLNKKQQDLILLGS
GDVTIPFEYINERGKNSIREHAFEGIVANFERRYRETDSMTVREELSRYQNVQTCPECKG
SRLRKEARFVKVGDKKQSRAIYEISALPLKEAKEYFETLELKGAKREIADKIVKEIGARL
RFLNDVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL
IGTLKHLRDLGNSVLVVEHDEDMIRASDWVIDIGPGAGIHGGEVVAQGTPAEVEANLNSL
TGAYLAGREAIAVPEKRIPVSDRFLEIIGARGNNLQSVHAKIPVGLLTCVTGVSGSGKST
LINDTLHHAVAQHLYGSNAEPAAHDAIKGLEHFDKVISVDQSPIGRTPRSNPATYTGLFT
PIRELFAGVPASRERGYEAGRFSFNVKGGRCDSCEGDGVIKVEMHFLPDVYVPCDVCHGK
RYNRETLDIRYKGKNIHEVLSMTIEQAFEFFEAVPVVKRKLKTLLDVGLGYVKLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIQLLLTVIQTLKKQGNTIVIIE
HNLDVIKTADWIIDLGPKGGAGGGQIIATGTPEDVAKNELSFTGHYLAPLLTRKIVSSKK
KK
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgaaatcaagatccgcggtgcccgcacccacaacctcaaaaacatcaatcta
gacatccctagagagaaactggtcgtccttactggcctctctggttcgggcaagagctca
ctggcttttgacaccctttatgccgagggtcaacgccgctacgttgaatccctctcagct
tatgctcgtcagtttttacaactcatggaaaaaccagacgtcgatacgattgaaggtctt
tcgcctgcgatttcaattgagcaaaaagcaacaagccacaaccctcgctcaaccgttggt
accgtcactgaaattcatgattacttgcgcttactctttgcacgtgcaggaacaccccac
tgcccagaacatgaccttcctttagaggcacaaagtgtctcgcaaatggttgataccgta
ttgtcaatgccagaagacactaagctcatgattcttgcgcccgtagtcagtgagcgcaaa
ggtgagtttgttgacctctttcaagatttacaagcacaaggctttgttcgttttcgcgtt
cgctcaggtggtggtacagccaacgctgctaaagcagagatttttgaagttgatcaatta
cctacgctaaagaaaaatgacaaacactcaatcgaagtagtggttgatcgaattaaagtt
cgtccagatattcaacaacgtttagcggaatctttcgaaacctccttacgcttagcggat
ggcaaggcaatgattgtggatatggacactggcaaagagatgattttctctagtaaattt
gcctgtccagtttgctcttattccttacaagaattagagcctcgcttattctcatttaat
aacccgatgggcgcctgcccttcctgcgacggcctaggtcaccagtccttctttgatcct
aagcgaatcgtagctcaccccgatttatcactagcttctggcgctatcaaaggctgggat
cgccgtaatcagttctacttcaaactccttcaaactcttgcaaagcatggtgggtttgac
gttgagaaaccgtttgagacattaaataagaaacagcaagatttgattttgcttggctct
ggtgatgtcaccattccatttgaatatatcaatgagcgtggcaaaaatagtattcgcgaa
catgcctttgaaggtattgttgccaactttgagagacgctaccgcgaaaccgattccatg
acggttcgcgaagaactctctcgctatcaaaatgtgcaaacttgcccagaatgtaaaggc
agtcgtttacgcaaagaagcacgttttgtcaaagtgggtgataaaaaacaatcacgcgct
atttatgaaattagcgctcttccactgaaagaagctaaagaatattttgaaacccttgag
ctcaagggtgccaaacgagaaatcgccgacaagattgtgaaagaaatcggtgctcgccta
cgctttttaaatgatgtcggcctcgattacctgtctttagagcgaagcgctgataccctt
tctggtggcgaagctcagcgtattcgactagcatcccaaattggctctggcctaacgggt
gtgatgtatgttttagatgaaccctctattggattacatcaacgcgacaatgatcgcctc
attggcaccctcaaacatttacgagatcttggtaatagcgttctcgtagttgagcatgat
gaagatatgattcgcgcctctgattgggtaattgacattggccctggtgccggcattcat
ggtggtgaggtcgttgctcaaggtacgccggcagaagtagaagcaaacttgaattcctta
accggtgcttacctggctggccgtgaggcaattgccgttccagaaaaacggattccagta
agcgatcgtttcttagaaattattggcgcacgtgggaataatttgcaatctgttcatgca
aagattccagtaggtttattaacttgcgtgactggcgtatcgggctctggtaaatccaca
ctcattaatgacaccttgcatcatgcagttgctcaacatttatatggctccaatgcagag
ccagcagctcatgatgcgatcaaaggcctagagcattttgataaagtcattagcgttgat
cagtcacctattggtaggacacctcgttctaatccggccacctatacgggcctgtttact
ccaatcagagaactctttgctggcgttcccgcatcacgtgagcgcggctacgaagccggg
cgcttctcctttaacgtaaagggtgggcgctgtgattcatgtgaaggcgatggcgtaatt
aaggtagaaatgcacttcttgccggatgtgtatgtgccttgcgatgtatgtcatggcaaa
cgttataaccgtgaaactctggatatacgctacaaaggcaaaaatatccacgaagtactt
tccatgaccattgagcaagcctttgaattcttcgaagcggtgccggtcgttaaacgcaaa
ctgaaaacactattagatgtcggcttaggttatgtaaagctgggacaaagtgctaccact
ctatcgggtggtgaagcgcaacgcgtcaagctatcgctagaactttctaagcgcgataca
gggcgcactctttacatcttggatgaacctacaacgggcctacatttccacgatatccaa
ctcttgttgactgttattcaaacactcaaaaagcaaggtaacacgatagtcatcattgag
cacaatctagatgtgatcaaaacggctgattggattattgatcttgggcccaagggtggt
gctggtggcggacaaattattgcaaccggaacccctgaagatgttgcaaaaaatgaactc
agtttcactggtcattatttagcacctttattgactcgaaagatcgtgagcagcaaaaag
aaaaaataa
DBGET
integrated database retrieval system