Populus nigra (Lombardy poplar): 133682471
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Entry
133682471 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133682471
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133682471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133682471
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133682471
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133682471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
BRCC36_C
DNA_pol3_a_NII
Motif
Other DBs
NCBI-GeneID:
133682471
NCBI-ProteinID:
XP_061961798
LinkDB
All DBs
Position
2:complement(45241555..45260722)
Genome browser
AA seq
2380 aa
AA seq
DB search
MIELSSTIPSQIRFLLHTLNEANVDSVFRDLCQFMEYGFEGSVLTLQTCLEYLKTDLKNM
QLEPVLVSVFKFVLDKPNSTTVFCQSLRSLEITENFLEKLSNSLKLSVAEKIGIGLALTD
AENADTRMFAKKFCMAQIEELCANPVLISSVDQVQNIVMFLQRSEGLSKHVDSFMQMLSL
MQSKDVTPFVLTPLISDELREANFWRNMDLFHGSTESEFDAILAEMEKEMSLGDIVKELG
YGCTFDALHCKEILSPFLPLSEVTISKILGTIARNLTGLEDNQSTFSTFGLALGCDITTD
LQQLSSWDVDILVKTIKQLAPGTNWIQVIENLDHEGFYIPNEEAFSFLMSAYRQACQNPF
PLHAICGSLWKNTEGQLSFLKHAVLAPPEVFTFAHSGRQLNYMDAVHGHKFQVGHANHAW
LCLDLLDVLCQLAETGHASSVRSILEYPLKHCPELLLFGMFNINTAYSLLQYEVSFRVFP
LILKSPACGGMMLYLWHLNPNLVLRGFVEAGNVESNIMTKILDVCQELKIFSSVLDMIPF
PSGIRLAALASRKELIDLEKWLSNNLITYKDSFFEECLRFLKEIQLGGSQDFSAKPFHHQ
SNIVNHYSETSSSFLKVLQAHTSLIISTELSEEMERLHVTAMDSNPRLQNGSSADSSTPD
GFSDDVEAEANSYFHQMFSGQLTIDAMVQMLARFKESSVKREQLIFECMIGNLFEEYRFF
PKYPERQLKIAALLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKSLEQFV
DRLIEWPQYCNHILQISHLRGTHNELVAFIERALARISSGHLESDGTNNASAAHHHGLLQ
AASVNGESNSINIPQLGQQLSSTLHSQQRHESSLDDRLKASAAPFNDTKPFLSSGGQSSA
ASSDASSIQKNTVTSSSLLSSSPGFVRPSRAVTSTRFGSALNIETLVAAAERRETQIEAP
GSEIQDKISFIINNISVANVEAKAKEFTEILKEQHYPWFAQYMVMKRASIEPNFHDLYLK
FLDKVYSKALSKEIVQNSYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLR
AREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMP
NLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVK
SGIISPLNHVELPLEVASPPNSGGHAHLLSQYTSPVHALMEDDKLAALGLSDQLPSAQGL
FQATPSQSTFSASQLPTAIPNIGTHVIINQKLNSWGLHVHFQRLVPAVMDRAIKDIVSGI
VQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRSSISSQ
LRNSVQSFSLTSEILEHAVQLVTNDNLDLGCAVIEQAATDKAIQTIDTEIAQQLVRRKHR
DGVGQTFFDANMYTQSSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSHSSHVIP
AGSASSGASGLASAYGSVSSDVASEAIESNSAALLSASSIHSAAADGVIPQSSENNSISA
SFSATAASSELHPVESSDVKESGVSSEPSLAASERAGSSVADASLNTRDALDKYQIIAQK
LETLVASDSREAEIQGVVTEVPEIILRCVSRDEAALAVAQKVFKGLYENASNSFHVNACL
AILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITLGLISSELLNLAEYNVHMAKLIDGG
RNKAATDFAISLVQALVVEESNVISELHNLVDALAKLATKSGSAESLQQLIEIVRNPGAN
AASLTSLTLGKEDKARQSRDKKPISQLIANREDYGNIESVEPEGFREQVSMLFAEWYRIC
ELPGANDAASTHYIFQLHQNGLLKGDEMTDRFFRVLTELSVAHCLSSEVNSSALQSPQQV
QSLSFLAIDIYAKLVLSILKVEQGSSKLFLLSKILSVTMKLVQKDSEERKNSFNARPYFR
LFISWLQDLLSPEPVIDGVNFQILTAFAGVFHNLQPLKVPGFSYVWLSLVSHRSFMPRLL
TGNAQKGWPYVQRLLVDLFQFLEPYLRNAELAVPVHLLYKGTLRVLLVLLHDFPEFLCDY
HFTFCDVIPPSCIQMRNIILSAFPLNMRLPDPSTPNLKIDLLPEIMEPPRIFSEVDAALK
AKQMKADVDEYLKTRQQGSSFLTELKQRLLLIPSEAASAGTRYNVPLINSLVLYAGMQAI
QQLQARTPHGQSAGNTVPLAVFLVDAALDIYQTLILDLDTEGRYLFLNAVANQLRYPNNH
THYFSFVLLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNR
SFIRCAPEIEKLFESVARSCGGLKPMDDSMVSSWVSESAH
NT seq
7143 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagctatcttcaacaataccgagtcagattcggttccttcttcacaccttgaac
gaagccaacgtcgactccgtgtttcgcgacctctgtcagttcatggagtatggatttgaa
ggaagtgttctgacgctccaaacatgtttggaatatttgaagactgacttgaaaaacatg
cagttggaacccgtactggtttcggttttcaagtttgttttggacaaaccgaattccact
actgtgttttgtcagtctttaagaagtttggagatcactgaaaatttcttagagaagttg
tctaattcgctgaagctatctgtggctgagaaaattggcattggtctcgcgctcaccgat
gcggagaacgctgataccaggatgtttgcaaagaagttttgtatggctcaaattgaggaa
ttgtgtgcgaatcctgttctgataagttcagttgatcaagttcagaatattgttatgttc
ctacagcggtcggaggggctatccaagcatgttgatagctttatgcagatgttgtcgtta
atgcagtcaaaagatgttaccccatttgttttaactccactgatttctgatgaactgcgc
gaggccaatttttggaggaatatggatctcttccatggaagtacagagagtgaatttgat
gctattttagctgaaatggaaaaggagatgagcttgggagatattgtgaaagagttaggc
tatggatgcacatttgatgcattgcactgcaaagaaatattatctccttttctgccactg
tcagaagttacaatctctaagatacttggaacaattgcccgcaaccttaccgggcttgag
gacaaccagagcacattttcaacgtttggcttggctcttggttgtgacattacaactgat
cttcaacagttaagctcctgggacgttgacatccttgtaaaaacaatcaagcaacttgct
cctggtactaactggattcaagttattgaaaatctggatcatgaaggattttacatacct
aatgaggaggcattctcctttctgatgtctgcatatagacaggcatgccagaatcctttc
cctctccatgcaatctgtgggtctctttggaagaatactgaaggtcaactatcttttctg
aaacatgcagtacttgcaccaccagaagtgttcacctttgctcattctggaaggcagctg
aactatatggatgctgtgcatggccataaattccaagttgggcatgctaatcatgcatgg
ctgtgtcttgaccttttggatgtgctttgtcaacttgctgagacaggtcatgctagttct
gttcgatcaattctcgagtatcctcttaaacactgtccggaattgttgctttttgggatg
ttcaatatcaatactgcctacagcctcctccaatacgaagtgtcttttagggttttcccc
cttatactcaaaagccctgcttgtggtggtatgatgctttacctttggcatctgaaccct
aatcttgtgttgcggggatttgtagaggctggcaatgttgaatcaaacatcatgaccaag
atattggatgtatgtcaagagctaaagattttttcatcagtattagacatgattcccttt
ccttctggtatccgattggcagcccttgcttcaagaaaagagcttatagaccttgaaaag
tggctgagtaataatttaattacatacaaggattcattcttcgaggaatgtctcaggttt
ctgaaggagattcagctcggtggatcacaggatttttctgcgaaaccttttcatcatcaa
agcaatattgtgaaccattattcagaaactagttcatccttcctgaaggtccttcaagct
cacaccagcttaattatctctaccgaactgtctgaggaaatggaaaggttgcatgtgaca
gcaatggactctaatccaaggctgcaaaatggtagctcagcagattcatctacccctgat
gggttttcagatgatgttgaggcagaggcaaactcttatttccatcaaatgttttctggt
cagctgacaattgatgcaatggttcaaatgcttgctagattcaaggaatcttcagtgaaa
agggaacaattgattttcgagtgcatgattggcaatctatttgaagaatatagattcttc
cctaagtatccagaaaggcaactaaaaattgctgctcttctttttggttctgttatcaag
caccagcttgttactcatctcactcttgggattgctttgcgtggtgttttagatgcactt
cgcaaacctccagattccaaaatgtttgtgtttggtaccaagtctttggagcagtttgtg
gatcgtttgattgaatggccacagtattgcaatcatatcttacaaatatctcatctgcgt
ggtactcataatgagcttgttgctttcattgaacgagcacttgccaggatttcatcaggg
catttggaatcagatggaactaacaatgcttctgctgctcatcaccatggtttgttacag
gctgcctcagtaaatggagagtcaaatagcattaacattccacagcttgggcagcaactt
tcatctacactccacagtcaacagagacatgaaagttctcttgatgaccgcctgaaggca
tctgcagctccatttaatgacactaaaccatttctatcttccggtgggcaatcttcagct
gcttcaagtgatgcttctagcattcagaagaatacagttacttcttcatctttgttgtct
tcttcacctggttttgtccgtccttcccgtgcagttacctctaccaggtttggctctgca
ttgaacatcgaaacacttgtagctgctgctgagagaagagaaacacaaatagaggctcca
ggatcagagattcaggacaaaatatcgttcataattaataatatttcagttgcaaatgtt
gaagctaaagcaaaagaattcactgaaatactgaaggagcagcactatccctggtttgct
cagtacatggtcatgaaaagagcaagcattgagcccaattttcacgatttgtacttgaag
ttccttgataaagtttattcaaaagctttaagtaaggagattgtccaaaactcatatgag
aactgcaaggttcttttgggatcagagctcataaaatctagttccgaagaacgttcattg
ctaaaaaatttgggaagctggcttggaaaattaactattggaaggaaccaagttctgagg
gcacgtgaaatagatcctaaatctttgatcatagaggcatatgagaagggattgatgatt
gcagttataccatttacatccaaggttctggagccatgtcaaagcagtctagcataccaa
cctcctaatccttggactatgggcattcttggattgctggctgagatctactcaatgcca
aacttgaaaatgaacctcaaatttgacatagaggtcttgttcaagaatcttggcgtagat
atgaaggacattgcaccaacttctctcctgaaggatcggaaaagggaaattgaagggaat
cctgatttttccaacaaagatgttggagcatcccaaccacagctggttcctgaagttaaa
tctggaattatatctccactaaatcatgttgagctaccgcttgaggttgcaagcccacct
aattctggtggtcatgctcatttgttatctcagtatacctctcctgttcatgcattgatg
gaggatgacaaactagctgcattaggcttgtctgatcagctcccttctgctcaaggtcta
ttccaagcgactccgtcccagtcaacattttctgctagtcagcttcccacagcaataccc
aacatcggaactcatgttattatcaatcagaaactaaattcttggggcttacatgtgcat
tttcaaagactggttcctgctgtaatggatagagctatcaaagatatcgtttctggtatt
gttcaacgaagtgtttctattgcaacacagacaacaaaagagcttgttctgaaggattat
gccatggaatccgatgaaacaagaatatataatgcagcacacttaatggttgccagtttg
gctggaagcttagctcatgtaacatgcaaggagccattacgtagttcaatatcaagtcag
ctaaggaattcagttcagagtttctctttaacaagtgaaattctggagcacgctgtgcaa
cttgttaccaatgataaccttgatcttgggtgtgcagtgattgaacaggctgccacagat
aaggccatacaaaccattgacactgaaatagctcaacaactagtaagaaggaagcataga
gatggtgttggccaaacattttttgacgcaaacatgtacacccaaagttctatgggtgtt
gtacctgaggcccttcgccccaagcctggtcacttgtctgtttctcaacagcgagtttac
gaggattttgttcgtcttccatggcaaaaccaatctagccatagctcacatgtcattcct
gcgggttctgcttcttctggtgcttctggtcttgctagtgcatatggttcagtttcatca
gatgtggcttctgaagctattgaatctaattcagctgcacttcttagtgcttcttcaatt
catagtgcagcagctgatggtgttatcccacaaagttctgaaaacaattcaatcagtgct
tcattctctgctactgctgcttcctctgaacttcacccagtggaatcctcagatgtaaag
gaatcgggagtttcttctgagccatctttagctgcttctgagcgtgctgggagtagcgtt
gcagatgcttccctgaacactagggatgcattggacaagtaccagattattgcgcagaag
ttggagactttagtggctagtgattctagagaagctgaaatccagggggtagttacagag
gttcctgaaatcatactcagatgtgtcagtcgagatgaggctgcattggctgtggcacaa
aaggtattcaagggtctatatgagaatgcatcgaacagttttcacgttaatgcttgcctt
gcaattctggctgctattcgtgatgtgtgcaagcttgtggttaaagaactcactagttgg
gtgatttactcagatgaggagcgaaagttcaataaagatattactcttggcctgataagc
agtgaattgctcaatcttgcagagtacaatgttcatatggcaaaacttattgatggggga
aggaataaagctgcaacggactttgccatttcccttgtccaagctttggttgttgaagaa
tccaatgtcatctctgaactccacaatcttgttgatgcactggccaagctagccacaaaa
tctggatctgccgagtcattacaacagctgattgagattgtcaggaatcctggtgccaat
gcggcttctctaactagtttaactcttggaaaggaggacaaggcaagacagtctagagac
aagaagcctatcagtcagctgatagctaacagggaagactatggcaacatcgaatctgtg
gaaccagaaggttttcgtgagcaggtttccatgctttttgcggaatggtaccggatatgt
gaacttcctggtgcaaatgatgcagcttctacccattacatctttcagctgcatcaaaat
ggattattgaagggggatgaaatgacagatcgctttttccgtgtactcacggagctttct
gttgcgcactgcttgtcctctgaggtgaattccagtgcactgcaatcacctcagcaagtg
cagagtctctccttccttgctattgatatttatgcaaaattggtcctttcaatcctaaag
gtggagcagggatcaagtaaactttttcttttgtcaaagattttgagtgtcactatgaaa
ctcgtacaaaaggattcagaggagaggaaaaattcttttaatgcaagaccatatttcaga
ttgtttataagctggcttcaagacctcctttccccagagcctgttattgatggtgtaaac
ttccagatcttgacagcctttgctggtgtattccataatctgcagcctcttaaagttcct
ggtttcagctatgtgtggctctcattagtgagtcataggagtttcatgccaagattgctc
acaggaaacgcgcagaagggctggccttatgtccagcggttgctggtggacttgttccag
ttcctggagccatatttgaggaacgccgagctagcagtgccagttcacttgctttataaa
ggtacgcttagggtgcttttggtgctgctgcatgatttcccagagttcctttgtgattac
catttcactttctgtgatgtgattcctccaagctgcatacaaatgcgtaatattattctc
agtgctttccctctcaatatgaggctgccggatccatctactcccaacttaaagattgat
ttgctaccggaaattatggaacctcctcgcattttctctgaggttgatgctgctcttaaa
gcaaagcagatgaaagctgatgtagatgagtatctcaagacgaggcaacagggttcttca
ttcctgactgaattgaagcagagattgctccttatacccagtgaagctgcgtctgctgga
acccgctataatgtaccgttgatcaactcccttgtgctttatgctggaatgcaggccatc
cagcagcttcaggcaagaacacctcatggacaatcggcgggaaatactgttcctttagct
gtatttttggtggatgctgctttagatatttaccagacgctaatactggacctagacact
gaaggccgatacctctttctaaatgccgttgccaatcaactacgctatccgaacaaccat
acacattacttctcttttgtcttgctttacttgtttgctgaatcaaaccaggaaattatc
caagagcagattacaagagtgcttttggaacgcctaattgttaatcgaccacatccatgg
ggccttctgattactttcatcgagctcatcaagaatcctaggtacaacttttggaatcga
tcattcataaggtgcgcaccggagatagagaaactttttgaatcggttgcaagatcatgc
ggaggcttaaagcccatggatgacagtatggtctccagttgggtttctgagagcgcacat
tga
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