Populus nigra (Lombardy poplar): 133692363
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Entry
133692363 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133692363
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133692363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133692363
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133692363
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133692363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DNA_pol3_a_NII
Motif
Other DBs
NCBI-GeneID:
133692363
NCBI-ProteinID:
XP_061969230
LinkDB
All DBs
Position
4:10716595..10737398
Genome browser
AA seq
2398 aa
AA seq
DB search
MIELSSTVPSQIRFLLHSLNEANVDSVFRDLCQFMEYELEGSILTLQTCLDYLKTDLTNM
HLEPVLASVFKFVLDKPNFATVFCQSLKSTEITEDFLEKLSNLLKLSVAEKIGTGLALSE
SENADTRMFAKKFCVAKIEELCANPVPMNSVEQIQNIVMFLQRSEGLSKHVDNFMQMLSL
MQSKDVVPFVLTPLISDELREANFLRNMDLFHGSTDSEFDAILAEMEEEMSLGDIVKELG
YGCTFDVLHCKEILSPFLPLTEVTISKILGTIARNLTGLEDNQSTFSTFGLALGCNITTD
LPQLSSWDIDVLVKTIKQLAPGTNWIQVIENLDHEGFYIPNEEAFSFLMSVYRQTCQDPF
PLHAIYGSLWKNTEGQLSFLKHAILAPPEVFTFAQSGRQLNYIDALHGHKLQVGHSNHAW
VCLDLLDMLCQLAERGHASSVRSMLEYPLKHCPELLLLGMSHINTAYCLLQYEVSFMVFP
LIIKSAAGSGMMLYLWHLNPNLVLRGFVDAHNVEPNIMTEILDACQELKILSSVLDMIPF
PSGIRLAALASRKELIDLEKWLGNNLITYKDSFFEECLKFLKEIQPGGSQDFSAKPIHPQ
STIVNLYSETGSSFLKVLKAHTSLVISTQLSEEMERLHVTVMDSNPRLQNGSSADSSTPD
GFSDDVEAEANSYFHQMFSGHLTIDSMVQMLARFKESSVKREQLIFECMIGNLFEEYRFF
PKYPERQLKIAALLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALEKFV
DRLIEWPQYCNHILQISHLRGTHAELVAFIERALARISSGHLESDGINNASAAHHHGLSQ
AASVNGESNSINIQQAGQQLSSTLHLQQRHESSLDDRLKASAAPFNETKQFASAAPFNES
KQFLSSSVQSSVAPSSDVSSIQKGTVTSSALLSSPGSVRPFRVVTSTRFGSALNIETLMA
AAERRETPIEAPGSEIHDKVSFMINNISVSNVEPKAKEFTEILKEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMG
ILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDV
GASQPQMLPEVKSGIISPLNHVELPLEGASPPNSGVHAHMLSQYTSPVHLSSGTLMEDEK
LAALGLSDQLPSAQGLFQATPSQSTFPASQLPTAIPNIGTHVIINQKLNSWGLHVHFQRL
VPTVMDRAIKDIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSL
AHVTCKEPLRSSISSQLRNSVQGFSLTSEILEHAVQLVTNDNLDLGCAVIEQAATDKAIQ
TIDMEIAQQLLRRKHRDGVGPAFFDANMYTQSSMGVVPEALRPKPGHLTPSQQRVYEDFV
RLPWQNQSSQSSHVIPTGSASSGATGLASAYGSVSLDVASEAIESNSAALLSAASIHSAT
ADGVIQQSSENNSTSASISATTSSELGPVESSDVVKEAGVSSQPSSSSVASERVGSSIAD
ASLNTRDALDKYQIIAQKLETLVTSDSREAEIQGVVAEVPEIISRCVSRDEAALAVAQKV
FKGLYENASNSFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITLGLMRSE
LLNLAEYNVHMAKLIDGGRNKVATDFAVSLIQALIVEESSVISELHNLVDALAKLAAKPG
SSESLQQLIEIARNPGVNAAALTSPALGKEDKTRQSRDKPSSQLIASREEYSNIETVEPD
GFHEQVSMLFAEWYRICELPGANDAASNHYILQLHQNGLLKGDEMTDHFFRVLMELSVAH
CLSSEVINSSVLQSPHQMQNLSFLAIDIYAKLVIAILKVEQGSSKLFPLSKILSITVRFI
QKDSEEKKNSFNARPYFRLFVSWLQDLLSPEPVADGVNFQILTAFAGAFHNLQPLKVPGF
SYVWLSLVSHRSFMPRLLIGNAQKGWPYVQRLLVDLFQFLEPYLRNAELAVPVHLLYKGT
LRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPLNMRLPDPSTPNLKIDLL
PEIREPPHILSEVDAALKVKQMKADVDEYLKTRQQGSSFLTELKQRLLLSPSEAASAGTR
YNVPLINSLVLYAGMQAIQQLQARTSHGQSAGNTVPLAVFLVDAALDIYQTLILDLDTEG
RYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGL
LITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPMDDSMVSGWVSESAH
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagttatcttcaacagtaccgagtcagattcggttcctccttcattccttgaac
gaagctaacgtcgattccgtctttcgtgacctctgtcagtttatggagtatgaacttgaa
ggaagtattttgacgctccaaacatgtttggattatttgaagactgacttgacaaacatg
catttggaacctgtacttgcatcggttttcaagtttgttttggacaaacccaatttcgct
accgtgttttgtcagtctttaaaaagtacggagatcactgaagatttcttagagaagttg
tccaatttattgaagttatctgtggctgagaaaattggcactggtcttgcgctctctgaa
tcagagaatgctgataccaggatgttcgctaagaagttctgtgtggctaaaattgaggaa
ttgtgtgcaaatcctgttccaatgaactctgttgagcaaattcagaatattgttatgttc
ctccagcggtctgaggggctttccaagcatgttgataactttatgcagatgttgtcgtta
atgcagtccaaagatgttgtcccatttgttttaactccgttgatttctgatgaattgcgc
gaggccaattttttgaggaatatggatctcttccatggaagtacagatagtgaatttgat
gctattttagctgaaatggaggaggagatgagcctgggagatattgtgaaagagttaggc
tatggatgcacatttgatgtgttgcactgcaaagaaatattatccccttttctaccactg
acagaagttaccatttctaagatacttggaacaattgcccgcaaccttaccggtcttgag
gacaaccagagcacattttcaacgtttggtttggctcttggttgtaacattacaactgat
cttccacagttaagctcctgggacattgacgtccttgtaaagactatcaagcaacttgct
cctggtactaactggattcaagtcattgaaaacctggatcatgaaggattttacatacct
aatgaggaggcattctcctttctgatgtctgtatatagacagacatgccaggatccgttc
cctctccatgccatctatgggtctctttggaagaatactgaaggtcagctatcttttctg
aaacatgcgatactggcaccaccagaagtgttcacctttgcccaatctggaaggcagctg
aactatattgatgctttgcatggccataagcttcaagttgggcattctaatcatgcgtgg
gtgtgccttgaccttttggatatgctttgtcaactggctgagaggggtcatgctagttct
gttcgatcaatgcttgagtatcctctcaaacactgtccagaattgttgcttcttgggatg
tcacatatcaatactgcctactgcctcctccaatatgaagtgtcttttatggttttccct
cttataatcaaaagtgctgctggtagtggtatgatgctttacctctggcatctgaaccct
aatcttgtgttgcggggatttgtagatgctcacaatgttgaaccaaacatcatgactgag
atattggatgcttgtcaagagctaaagattttgtcatcggtattagacatgattcccttt
ccttctggtatcagattagcagccctcgcctcaagaaaagagcttatagaccttgaaaag
tggctgggtaataatttaattacatacaaggattcattcttcgaggaatgtctcaagttt
cttaaggagattcagcctggtggatcacaggatttttctgccaaacctattcatcctcaa
agtaccattgtgaatctttattcagagactggttcatccttcctgaaggtccttaaagcc
cacaccagcttagttatatctacccagctttctgaggaaatggaaaggttgcatgtaaca
gttatggactctaatccaaggctgcagaatggtagctcggcagattcatctacccctgat
gggttttcggatgatgttgaggcagaggcaaactcttatttccatcaaatgttttctggt
catctgacaatagattccatggttcaaatgcttgctcgattcaaggaatcttctgtgaaa
agggaacaattgatttttgagtgcatgattggcaatctatttgaagaatatagattcttc
ccaaagtatcctgaaaggcaactaaaaattgctgctcttctttttggttctgttatcaag
caccagcttgttactcatctcactcttgggattgccttgcgtggtgttttagacgcgctt
cggaaacctccagattccaaaatgtttgtgtttgggaccaaggcgttggagaagtttgtg
gatcgtttgattgaatggccacagtattgcaatcacatcttacaaatatcgcatctgcgt
ggcactcatgctgagcttgttgctttcattgaacgagcacttgccaggatttcatcaggg
catttggaatcagatggaattaacaatgcttctgctgctcatcaccatggtttgtctcag
gctgcctcagtaaatggagagtcaaatagcattaacattcaacaggctgggcagcagctt
tcctctacactccatcttcaacagagacatgaaagttctctcgatgaccgtttgaaagca
tctgctgctccatttaatgagactaaacaatttgcatctgcggctccatttaatgagagt
aaacaatttctatcttccagtgtgcaatcttcagttgccccctcaagtgatgtttctagc
attcagaagggtacagttacttcttcggctttgttgtcttctcctggttctgtccgtcct
ttccgagtagttacctccaccaggtttggctctgcattgaacatcgaaacacttatggct
gctgctgagagaagagaaacaccaatagaggctccaggatcagagattcatgacaaagta
tcattcatgattaataatatttcagtatcaaatgttgaacctaaagcaaaagaatttact
gaaatactaaaggagcagtactatccctggtttgcgcagtacatggtcatgaaaagagca
agcattgagcccaattttcatgatttgtacttgaagttccttgataaagttaattcaaaa
gctttaaataaggagattgtccaagccacatatgaaaactgcaaggttcttttgggatca
gagcttataaaatctagttcagaagagcgttcattgcttaaaaatttgggaagctggctt
gggaaattaactattggaaggaaccaagttctgagggcacgtgagatagatcccaaatct
ttgatcatggaggcatatgagaagggattgatgattgcagttataccatttacatccaag
gttctagagccatgccaaaacagtctagcgtaccaacctcctaatccttggactatgggc
attcttggattgctggctgagatctactcaatgccgaacttgaaaatgaacctcaaattt
gatatagaggtattgttcaagaaccttggtgtagatatgaaggacatagcaccaacttct
cttcttaaggaccggaaaagggaaattgaagggaatcctgatttttccaataaagatgta
ggagcatcccaaccacagatgcttccagaagttaaatctggaattatatctcccctaaat
catgttgagctaccacttgagggtgcaagcccacctaattctggcgttcatgctcatatg
ttatctcagtacacctctcctgtccatctttcttcgggtacattgatggaggatgaaaaa
ctagctgcattaggcttgtctgatcagctcccttctgcacaaggactattccaagctact
ccatcccagtcaacatttccggctagtcagcttcccacagcaatacctaacatcggaact
catgttattatcaatcagaagttaaattcttggggcttacatgtgcattttcaaagactg
gttcctactgtaatggacagagccatcaaagatattgtgtctggtattgttcagagaagt
gtttctattgcaacacagacaacaaaagagcttgttttgaaggattatgccatggaatcc
gatgaaacacgaatatataatgcagcgcacttaatggttgccagtttggctggaagctta
gctcatgtaacatgcaaggagccattacgtagttcaatatcaagtcagctaaggaattca
gttcagggtttctccttaacaagtgaaattctggagcatgctgtgcaacttgttactaat
gataaccttgatcttgggtgtgcggtgattgaacaggctgctactgataaggccatacaa
accattgacatggaaatagctcaacaacttctaagaaggaagcatagagatggtgttggt
ccagcattttttgatgcaaacatgtacacccaaagttctatgggcgttgtacctgaggcc
cttcgccccaagcctggtcacttgactccctctcaacagcgagtttatgaggattttgtt
cggcttccgtggcaaaaccaatctagccagagctcacatgtcatccctacgggttctgct
tcttctggtgctactggtcttgctagtgcatacggttcagtttcattggatgtggcttca
gaagccattgaatctaattcagctgcacttcttagtgctgcatcaattcatagtgcgacg
gctgatggtgttatccaacaaagttctgaaaacaattccaccagtgcttcaatttctgct
accacttcctctgaacttggtccagtggaatcctcagatgttgtaaaggaagcgggagtt
tcttctcaaccatcatcttcatcagttgcttctgagcgtgttgggagtagcattgcagat
gcttcattgaacactagggatgcgttggacaagtaccagattattgcgcagaagttggag
actttggtgactagtgattctagagaagctgaaatccagggggtagttgcagaggttcct
gaaatcataagtagatgtgtcagtcgagatgaggctgccttggctgtagcacaaaaggtt
ttcaagggtttatatgagaatgcatcgaacagttttcacgttaatgcctgccttgctatt
ctggctgctattcgtgatgtgtgcaagcttgtggttaaagaactcactagctgggtgatt
tactcagacgaggagcgaaagttcaataaagatattacccttggcctgatgcgtagtgaa
ttgctcaaccttgcagagtacaatgttcatatggcaaaactcattgatgggggaaggaat
aaggttgcaacggactttgctgtttccctcatccaagctttgattgttgaagaatccagt
gtcatctctgaactccacaatcttgtcgatgctctggccaagcttgccgcaaaacctgga
tcttccgagtcattacaacagcttattgagattgctaggaatcctggtgtcaatgcagct
gctctaactagtccagctcttggaaaggaggacaagacaagacagtctagagacaaacct
tccagtcagttgatagctagcagggaagaatatagcaacattgaaactgtggaaccagat
ggttttcacgagcaggtttccatgctttttgcggaatggtatcggatatgtgaacttcct
ggtgcaaatgacgcagcttctaaccattacatcttacagctgcatcaaaatggattgctg
aagggggacgagatgacagatcacttttttcgcgtactcatggagctctctgttgcgcac
tgcttgtcctctgaggtgatcaattccagtgtactgcaatcacctcatcaaatgcagaat
ctctccttccttgctattgatatctatgcaaaattggtcattgcaatcctaaaggtggag
cagggatcaagtaaactctttcctttgtcaaagatcttgtccatcactgtgagattcata
caaaaggattcagaggagaagaaaaattcttttaatgcaagaccatatttcagattgttt
gtaagttggcttcaagatctcctttccccagagcctgttgccgatggtgtaaactttcag
atcttgacagcctttgctggtgcattccacaatctgcagccccttaaagttcctggtttc
agctatgtgtggctctcattggtgagtcataggagtttcatgccaagattgctcatagga
aatgcacagaagggctggccctatgttcagcggttgctggtagacttgttccagttcctg
gagccctatttgaggaatgccgagctggcagtgccagttcacttgctatataaaggtaca
cttagggtgcttttggtgctgctacatgatttccctgagttcctctgtgattaccatttc
actttctgtgatgtgattcctccaagctgcatacaaatgcgtaatattattcttagtgct
ttccccctcaatatgaggcttccagatccatcaactcccaacttaaagattgatttgctt
ccggaaattagggaacctcctcacattctctccgaggttgatgcagctcttaaagtaaag
cagatgaaagctgatgtagatgagtatctcaagactaggcaacagggttcttcattcctg
actgaattgaagcagagattgctcctttcacctagtgaagctgcatctgccggaacccgt
tataatgtaccgttgatcaactcccttgtcctttatgctggaatgcaggccatccagcag
ctgcaggcaagaacatctcatggacaatcggctggaaatactgttcctttagctgtattt
ttggtggatgctgctttagatatctaccagacgcttatactggacctagacacagaaggc
cgatacctctttctaaatgctgttgctaatcaactgcgctatccgaataaccacacacat
tacttctcatttgttttgctttacttatttgctgaatcaaaccaggaaattatccaagag
cagattacaagagttcttttggaacgtctaattgttaatcgaccacatccgtggggcctt
ctgattactttcatcgagctcatcaagaatcctagatacaacttttggaatcgatcattc
ataaggtgcgcaccggagatagagaaactattcgagtcagttgctagatcatgcggcggc
ttgaagcccatggatgacagcatggtctctggttgggtttctgagagcgcacactga
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integrated database retrieval system
