Populus nigra (Lombardy poplar): 133704854
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Entry
133704854 CDS
T10372
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133704854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133704854
Spliceosome [BR:
pnz03041
]
Complex A
U1 snRNP components
U1 related factors
133704854
Complex B
133704854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF5001
Motif
Other DBs
NCBI-GeneID:
133704854
NCBI-ProteinID:
XP_061985858
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All DBs
Position
1:complement(20271698..20285396)
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AA seq
1022 aa
AA seq
DB search
MANNPQFSGMQPLQPPLVGPMDHPQNFAPPPSMPIQFRPVGPVQPSQQFIPVSSPHFQPV
GRGVTVMNPGLPPQPPQPQFPHPMQQLPARPNQPSLGPPPPQAIPLPNAQPNRHVMSGSP
LPPPSVQTPNSYMPGLGGPGVPLSSSYTFAPSSYGQPPVTFNAVTQFQPMPQMHAQPIPT
GGHPASSMKQNTAPVTPIQRNGEQSSVITTNVLATSIQPKPTEEASTEWKEHTSANGRRF
YYNKRTRQSSWEKPYELLTPIERADASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEELKL
ARARVENTSTMEKQSEVFTNSHASTSIPPSADKTPSIADASTAQGAPSSPVLVIPVAAAG
NSQLQLASESSTLPVMSSSMTTNADEVQTIEIPVADVPKSAEVTATAVNTITAPMNNFSV
QDKPSSADEAPALDKEEAEKEVVIDEKVNNVPLEEKAVNHEPLLYADKLEAKNLFKALLE
SANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKKKQEAEERRIKQKKARE
EFKNMLEESKELTASIRLSKAVTLFENDERFKAVERERDRKDLIETYLQELEEKERAKAQ
EQRKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRIEIFQDYLHDLEK
EEEEQRKIHKEELRKAERKNRDEFRKLLEEHVAAGTLTAKNNWRDYHLKVKDLPAYVAVA
SNNSGSTPKDLFEDVAEELQKQYHEDKTRIKDVVKLKKVPLASTWTLEDLKVAIIEDVGS
PHISDVNLKMVFDELLERAREKEEKEARKRKRLEDDFLILLQSIKDITASSKWESCKEIF
DGSREYSSIGEEGFCREIFEEYVSQLKDQEKENEWKRKEEKAKKEKEREERERRKAKHRR
EKERGHDRETRKEEEDVEIDDTIENQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDR
SKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRE
TR
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaccctcaattctctggaatgcagcctctccagcctcctctggttggcccc
atggatcatcctcaaaattttgctccgccaccatcaatgcccattcaattccgaccagtt
ggtccagtgcagccatcacagcaattcattcctgtgagttctccacactttcagcctgta
ggccgaggtgtcacagtgatgaatccaggattgcctccccaacccccacaacctcaattt
cctcacccaatgcagcagttaccagctagacctaaccagccaagccttggtccaccacca
cctcaggcaattccattaccaaatgctcagccaaacaggcatgtcatgtctggatctcca
ctgcctccacctagtgttcaaactccaaacagctacatgcctggtttaggtggcccagga
gtgcctctatcttcatcatatacttttgcaccgtcttcatatggtcaaccacctgtaacc
tttaatgctgtaactcaatttcagcccatgcctcaaatgcatgcacagcctattcccact
ggaggacaccctgcatcatccatgaaacagaacactgcaccagttacacctatacagcgc
aatggcgaacaatcttcagttatcactactaatgttctggcaacaagtatccagcctaag
ccgactgaagaagcctcgacagagtggaaagaacatacatctgctaatggaaggagattt
tattacaataagaggacaaggcaatctagttgggagaagccttatgagttgctgacgcca
attgagagggcagatgcatcaactgactggaaggagtttaagagtcctgatggacgaaaa
tattactacaataaagttaccaagcaatcaaaatgggaaatcccagaagaattgaagttg
gcccgtgcacgagtagaaaatacatctaccatggaaaaacaatcagaagtctttacaaat
tctcatgcctctacttctattcctccatccgcggataagacaccatcaattgcagatgct
tctacagctcaaggggcaccatcgagtccggttcttgttatacctgttgctgctgctggt
aattcacagttgcagttagcttctgaatcatcgaccttacctgtcatgtcatcttccatg
acgaccaatgcagatgaagttcagacaattgagattcctgttgctgatgttccaaaaagt
gctgaagtcactgccacagcggtgaacaccataactgcaccaatgaacaacttttcagtt
caagataaacctagttcagcagatgaagctcccgcactagacaaagaggaagctgaaaag
gaggtggtcatagatgaaaaggttaacaatgttccattggaagagaaagcagttaatcat
gagcccttactttatgctgataagctggaagcaaaaaatttatttaaagcacttctggag
tctgcaaatgttgggtctgaatggacatgggaccaggccatgagagtaataattaatgat
aaaagatatggtgcattaaaaacacttggagagagaaagcaagcatttaatgagttcttg
ggtcaaaagaaaaaacaggaagctgaggaaaggaggattaaacagaaaaaagcacgggaa
gaattcaagaacatgctagaagagtccaaagagctgacagcatcaattagattgagcaaa
gcagtgactttgtttgaaaatgatgagcggtttaaagctgttgaacgggaaagagaccgt
aaggatctgattgaaacctacttgcaggaacttgaagaaaaggaacgagcaaaggcacag
gagcagcgcaagaggaacattatggaatataggcagtttctggaatcatgcgaattcatt
aaggcaagcacccagtggcgaaaagtacaagatcggttagaagctgatgaaagatgttca
cgtcttgaaaaaattgatcgcatagaaatttttcaggattatttacatgatttggagaag
gaagaagaggagcaaaggaagatacataaggaagaactgagaaaggcagagcgtaaaaat
cgtgatgagttccgcaagctacttgaagaacatgttgctgcaggcactcttactgccaaa
aataactggcgtgattatcacctgaaggttaaagatttacctgcatatgtggctgttgct
tcaaacaactcaggttcaactccaaaagatttgtttgaagatgtcgctgaggagctacag
aaacagtatcatgaggacaaaactcggataaaggatgttgtaaagttgaaaaaggttccg
ttggcatcaacctggacacttgaagatttgaaggttgctattatcgaggatgttggctct
ccacatatatcagatgtgaacctaaagatggtatttgatgaattgctggaaagagccagg
gaaaaggaggagaaagaagccaggaagcgtaaacgtcttgaggatgattttctcattcta
ctacagtctattaaggatataactgcatcttctaagtgggagagctgcaaggaaatcttt
gatggtagccgagaatacagttccattggtgaagaaggcttctgtagagagatatttgag
gaatatgtatctcaactgaaagatcaggagaaagagaatgagtggaaacgaaaggaggaa
aaggcaaaaaaggaaaaagagagggaggagagagaaaggaggaaagcaaaacatagaagg
gaaaaggagaggggacatgatagagaaacaagaaaggaagaagaagatgttgaaattgat
gatacaatagaaaatcaagtttgtagtgataagaaaagatctgggagtgacaatagcagg
aaacagaggaagaggcatcaaaatgctgtggatgatctggatgaaagtgagaaggatagg
tccaagagttcacacagacatagcagcagtgacctcaaaaaatcaagaaggcatgcttcc
actcctgagtcagatagtgaaagcaggcacaagagacacaagagagaccaccgaaatagt
tctcgtagaactggtgatcttgaggatcttgaagatggggaatttggtgaggatagggaa
actcggtag
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