KEGG   Polaribacter vadi: LPB03_02020
Entry
LPB03_02020       CDS       T04504                                 
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
pob  Polaribacter vadi
Pathway
pob03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pob00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LPB03_02020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pob03019]
    LPB03_02020
Messenger RNA biogenesis [BR:pob03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LPB03_02020
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 KH_PNO1_2nd HDOD KH_KhpA-B KH-I_KHDC4-BBP DUF4407 KH_NusA_2nd DUF4530
Other DBs
NCBI-ProteinID: AOW16313
UniProt: A0A1B8U0G8
LinkDB
Position
454405..455973
AA seq 522 aa
MEGIILPIIMGVLIGVALGFIIFRSMEKAKGKKMLNGVRKEAATILKEAKIDAESVKKDK
ILQAKEKFIELKSEHEKVIISREKKISDVEKRIRDRESKVASEYDKNKRLNQSLEQKEKD
YDFKIDFLEKKEDDLDKMHKRHVDMLEQISGLSAEEAKKELVSSLKEEAKSEAMAFVQTS
IEEAKLTAEQEARKVVLGTIQRVGVEQAVENCVSVFNLESDDVKGRIIGREGRNIRALEA
ATGVEIIVDDTPEAIILSCFDPVRREIARLSMHKLVTDGRIHPARIEEIVKKTENQIHQE
IIEVGKRTVIDLGIHGLHPELIKTVGRMKYRSSYGQNLLQHSREVSNLCGIMASEMGLNA
KLAKRAGLLHDIGKVPNEESELPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEEIAFGFTGVQKAYAIQAGRELRVMVESDK
VNDTKAAELSFSISQKIQNDMTYPGQVKVTVIRETRAVNVAK
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggaaggaataatactacccattattatgggagttttaataggagtagctttaggtttt
ataatctttagatcgatggaaaaagctaaaggtaaaaaaatgcttaatggtgttagaaaa
gaggcagcaaccattttaaaagaagctaaaattgatgcagaatctgttaagaaagataaa
attttacaagcaaaagaaaaatttatcgaacttaaatcggagcacgaaaaagttattata
tcaagagaaaaaaagatttctgatgtagaaaaaagaattagagatcgagaatctaaggta
gcatcagaatacgataaaaataaacgtttaaatcaatctttagaacaaaaagaaaaagat
tatgattttaaaatcgactttttagaaaagaaagaagacgatttagataagatgcacaaa
cgtcatgtagatatgttagagcaaatttctggtttgtctgcagaggaagctaaaaaggaa
ttggtttcttctttaaaagaggaagctaaatcagaagcaatggcttttgtacaaacatct
attgaagaagcaaaattaacagcagaacaagaagcaagaaaagttgttttaggaactata
caaagagttggggtagagcaagcagtagaaaattgtgtatctgtttttaacttagagtca
gatgatgttaaaggtaggattattggtcgagaaggacgtaatattagagctttagaagct
gcaactggtgtagaaattattgttgatgatactccagaagcaattatactttcttgtttt
gatccagttcgtagagaaattgctcgtttatcaatgcataaattagtaacagatggtaga
attcacccagcaagaattgaagaaattgttaagaaaaccgaaaaccaaattcaccaagaa
attatagaagttggtaaaagaacagtaatagatttaggaattcacggtttgcacccagaa
ttgattaaaactgtgggtcgtatgaaatacagatcttcttatggacagaatttgttacaa
cattcacgtgaagtttcaaatctttgtggaattatggcttctgaaatgggcttaaatgca
aaattagctaaaagagcaggtttattgcacgatattggtaaagtgccaaatgaagaaagc
gaattgcctcatgcacttttaggaatgcaatgggctgaaaaatatggtgaaaaagaagaa
gtttgtaatgcaattggagctcaccatgatgaaattgaaatgaagagtttactttctcct
atagtacaagtttgtgatgctatttctggagcaagaccaggtgcaagacgtcaagttttg
gattcttacattcaacgtttaaaagatttagaagaaatagctttcgggtttacaggagtt
caaaaagcctacgctattcaagctggtcgtgaattacgtgttatggttgaaagtgataaa
gtaaacgatacaaaagcggctgaattatcttttagtatttcacaaaaaatacaaaatgat
atgacgtatccaggacaagtaaaagttactgtaattagagaaactagagctgtgaatgta
gctaaataa

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