Polaribacter vadi: LPB03_02020
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Entry
LPB03_02020 CDS
T04504
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pob
Polaribacter vadi
Pathway
pob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB03_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pob03019
]
LPB03_02020
Messenger RNA biogenesis [BR:
pob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB03_02020
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
DUF4407
KH_NusA_2nd
DUF4530
Motif
Other DBs
NCBI-ProteinID:
AOW16313
UniProt:
A0A1B8U0G8
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Position
454405..455973
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AA seq
522 aa
AA seq
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MEGIILPIIMGVLIGVALGFIIFRSMEKAKGKKMLNGVRKEAATILKEAKIDAESVKKDK
ILQAKEKFIELKSEHEKVIISREKKISDVEKRIRDRESKVASEYDKNKRLNQSLEQKEKD
YDFKIDFLEKKEDDLDKMHKRHVDMLEQISGLSAEEAKKELVSSLKEEAKSEAMAFVQTS
IEEAKLTAEQEARKVVLGTIQRVGVEQAVENCVSVFNLESDDVKGRIIGREGRNIRALEA
ATGVEIIVDDTPEAIILSCFDPVRREIARLSMHKLVTDGRIHPARIEEIVKKTENQIHQE
IIEVGKRTVIDLGIHGLHPELIKTVGRMKYRSSYGQNLLQHSREVSNLCGIMASEMGLNA
KLAKRAGLLHDIGKVPNEESELPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEEIAFGFTGVQKAYAIQAGRELRVMVESDK
VNDTKAAELSFSISQKIQNDMTYPGQVKVTVIRETRAVNVAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaataatactacccattattatgggagttttaataggagtagctttaggtttt
ataatctttagatcgatggaaaaagctaaaggtaaaaaaatgcttaatggtgttagaaaa
gaggcagcaaccattttaaaagaagctaaaattgatgcagaatctgttaagaaagataaa
attttacaagcaaaagaaaaatttatcgaacttaaatcggagcacgaaaaagttattata
tcaagagaaaaaaagatttctgatgtagaaaaaagaattagagatcgagaatctaaggta
gcatcagaatacgataaaaataaacgtttaaatcaatctttagaacaaaaagaaaaagat
tatgattttaaaatcgactttttagaaaagaaagaagacgatttagataagatgcacaaa
cgtcatgtagatatgttagagcaaatttctggtttgtctgcagaggaagctaaaaaggaa
ttggtttcttctttaaaagaggaagctaaatcagaagcaatggcttttgtacaaacatct
attgaagaagcaaaattaacagcagaacaagaagcaagaaaagttgttttaggaactata
caaagagttggggtagagcaagcagtagaaaattgtgtatctgtttttaacttagagtca
gatgatgttaaaggtaggattattggtcgagaaggacgtaatattagagctttagaagct
gcaactggtgtagaaattattgttgatgatactccagaagcaattatactttcttgtttt
gatccagttcgtagagaaattgctcgtttatcaatgcataaattagtaacagatggtaga
attcacccagcaagaattgaagaaattgttaagaaaaccgaaaaccaaattcaccaagaa
attatagaagttggtaaaagaacagtaatagatttaggaattcacggtttgcacccagaa
ttgattaaaactgtgggtcgtatgaaatacagatcttcttatggacagaatttgttacaa
cattcacgtgaagtttcaaatctttgtggaattatggcttctgaaatgggcttaaatgca
aaattagctaaaagagcaggtttattgcacgatattggtaaagtgccaaatgaagaaagc
gaattgcctcatgcacttttaggaatgcaatgggctgaaaaatatggtgaaaaagaagaa
gtttgtaatgcaattggagctcaccatgatgaaattgaaatgaagagtttactttctcct
atagtacaagtttgtgatgctatttctggagcaagaccaggtgcaagacgtcaagttttg
gattcttacattcaacgtttaaaagatttagaagaaatagctttcgggtttacaggagtt
caaaaagcctacgctattcaagctggtcgtgaattacgtgttatggttgaaagtgataaa
gtaaacgatacaaaagcggctgaattatcttttagtatttcacaaaaaatacaaaatgat
atgacgtatccaggacaagtaaaagttactgtaattagagaaactagagctgtgaatgta
gctaaataa
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