Paenibacillus odorifer: PODO_01005
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Entry
PODO_01005 CDS
T03326
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pod
Paenibacillus odorifer
Pathway
pod00040
Pentose and glucuronate interconversions
pod01100
Metabolic pathways
pod02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PODO_01005
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PODO_01005
Enzymes [BR:
pod01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PODO_01005
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CBM77
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AIQ71967
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Position
205990..208143
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AA seq
717 aa
AA seq
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MKKRVAKVTSIVVLFSLALSLIVGGWTNTVVHAAGLAVTGSGGWNETAYVEWSPVSNATG
YNVYVKLASAADSGYQQINNELIRKYSSYWRADAVGLAAGNYVMKVEATLSGGGTVSAVS
NPLSVTSYDRSGFAFSTSSQYGTGSGAYNENGTLKNGAQVLYITSQNAQTVTLGVKINSS
GAVQTGVGLGGILTLRQKGYDTTPLAIRIIGKVTAADLSGQLNSSGYLEVKGKNNYSEMN
ITIEGIGNDAYAYGWGMLLRYVGNVEVRNLGVMLFPDDGISMDSGNMNVWVHNNDIFYGA
AGGDADQAKGDGSTDLKNGSNYITISYNHYWDSGKSSLVGLSEPAEFFVTFHHNWFDHSD
SRHPRIRVASVHIYNNFFDGISKYGVGVTTGASAFVESNYFRHAKFPMMISLQGTDALGE
GTFSGENGGVIKAYNNLIVEASSLIYANSNTGTAPANATSFDAYLASSRNETVPSSYKAL
KGGTAYNNFDTSVNTGVNVSNIDNVSNVEQIVMAKAGRLNGGDFTWEFNDSVDDVSYALN
TALMSAIRGYTTGLVSVGGNSNPTNPTPTPSVTPTPTVTPVPTATPAPTATPVPTATPAP
TTTPVPTAGATVHNFTTDGTTSSFFNIQGNLSTSKGTVAYQGLTLSQCLKIESATSIQFT
SAKASTLTLVFNTEGTKIKVDGTSYPITNGIATVSLAAGAHTITKDSTANLYYMKLE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaagagttgcaaaggtaaccagtattgttgtgttgttttctcttgctctttct
ttaatagtaggtggatggacaaatacggtggtgcatgctgctggtcttgcggtaacaggc
agtggaggctggaatgaaacggcatatgtggaatggtcacctgtaagcaatgcgacaggg
tataacgtttatgttaaattggcaagtgcagcggattctgggtatcaacaaattaataat
gagttaatccgcaaatattcttcctactggagagcagatgctgttgggcttgcagccggt
aattatgtgatgaaagttgaagctaccttgtcagggggtgggacggtaagtgcggtttca
aatccactatccgtaacgtcatatgaccgctcaggatttgctttttcgactagttcgcaa
tatggtacaggatcaggggcttataatgagaatggaaccctcaagaatggtgctcaagtg
ctgtatataacatctcagaatgcgcaaaccgtaacccttggtgtgaaaatcaacagctcc
ggcgctgtacaaacaggggttggtctgggtggtattctgacactgagacaaaaaggttat
gatacaactccacttgcgatccgaattatcggaaaagttacagctgctgatctgagtgga
cagcttaacagcagtgggtatcttgaagtcaaaggtaaaaacaattattcggaaatgaat
attactattgaaggtatcgggaatgatgcttacgcgtacggttggggaatgcttctaaga
tatgtaggtaatgtggaagtaagaaacctgggtgtaatgttattccctgacgatggcatt
tcaatggattccggcaatatgaatgtctgggtgcataataatgatattttttatggagct
gctggaggcgatgcagaccaagccaagggcgacggttccacagaccttaaaaatggatcc
aactatattacaatctcttacaaccattactgggattccggaaaatcctcgctagttggt
ttgagtgagccggctgaattttttgttaccttccaccacaactggtttgaccattcggac
tcccgtcatccgcggattagagtggcttccgtccatatctataacaactttttcgatggt
atctccaaatacggtgtgggtgtaactacaggtgcttcagcttttgtagaatctaattat
tttagacatgctaaatttccaatgatgatctccttacaaggtacagatgctttaggggag
ggtacgttctcaggcgaaaatggaggtgtgattaaagcctataacaatcttattgtagag
gcttcaagtctcatctatgcgaattcaaacacagggacagctcctgctaatgctacctca
tttgatgcttacttagcttcgtcaagaaatgaaaccgtcccaagctcatacaaagcacta
aaaggcggaacagcctataataacttcgacacgagcgtaaatacaggagtgaacgtatct
aatattgataacgtaagcaatgttgaacagattgttatggcaaaagccggacgtctgaat
ggcggagacttcacatgggaatttaatgattcagtggatgacgtttcgtatgcgctgaat
acagcgctgatgtctgcaatcagaggctacacaacgggacttgtctctgtaggggggaat
tcaaacccaacgaacccgactccgactccatcagtaacacctacgccaacagtaactcct
gtgccaacagcgaccccagctccaacagcaactcctgtaccaacggcgactccagcaccg
acgacaacgccagtgccgacagcgggagcaaccgttcacaactttactacggatggaaca
acaagcagcttcttcaatatccaaggcaatctctcaacaagtaagggaactgtggcatat
cagggtttaaccctatcccaatgtctaaaaatcgagagtgcaaccagcattcaattcact
tctgctaaagcttcaacgctaaccctagtgttcaacacagagggaacgaaaatcaaagtg
gatggaacaagttaccctataaccaatggcattgccactgtctctctggccgcaggtgcg
cataccattacaaaagatagtacggcgaatctgtattatatgaagctggaatag
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