Polynucleobacter paneuropaeus: DPM16_00265
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Entry
DPM16_00265 CDS
T05507
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DPM16_00265 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poh03021
]
DPM16_00265 (rpoB)
03400 DNA repair and recombination proteins [BR:
poh03400
]
DPM16_00265 (rpoB)
Enzymes [BR:
poh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DPM16_00265 (rpoB)
Transcription machinery [BR:
poh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DPM16_00265 (rpoB)
DNA repair and recombination proteins [BR:
poh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DPM16_00265 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AWW43789
UniProt:
A0A2Z4JJV4
LinkDB
All DBs
Position
43417..47517
Genome browser
AA seq
1366 aa
AA seq
DB search
MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQAEKPPTSRITEGLQAAFTSA
FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPTKVKEV
KESEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNNEQILANFFNFDHFTLSANGG
SMEFVPERLRGQLANFDVLDKNGVVVIQKDKRINAKHIRELEAAKTKNIVVPDDYLIGRV
VARNIIDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTLRTDET
ADQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNRPEMEG
PMVLSNEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVAN
SKVSDEVVYLSAIEEAKYVIAQANATIDKNGKLADELVSARQAGETMMVSPERIDFIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVDSGTVV
LANRGGIVDYVDANRVVIRVNDDETAAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGDR
VERGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETTLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDARAQSIIQEELQRY
RLDLNDQLRIVEGDAFMRLEKLLVGKVANGGPQKLAKGSKIDKAYLADLDKYHWFDIRPA
DEDVASQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAQG
IGKRIDEMVREHAKQAELRKFMKQLYNETGRHEDIDGFTDEQITALAENLRQGLPFATPV
FDGATEAEIARMLELAYPQDVATALQMTPSRQQMILRDGRTGDQFERPVTVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVTGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIDIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaactatagcttcaccgaacgcaagcgagtccgtaaaagctttgctaagcgagtaaat
aatcaccaggttccatacctgattgcaacccagctggagtcctacgctaaatttttgcag
gcagagaagcctccaacttcgcgtattacagaaggcctacaagccgcatttacttctgcc
ttcccaattgtttccaacaatggctatgcacgtatggaatacgtgtcatatcaattgtcg
cagccaccatttgacgtcaaagaatgtcaacaacggggctatacctaccattctgccttg
cgcgccaaagttcgcttgatcatttatgaccgcgaagcgcctactaaggttaaggaagtc
aaagagagcgaagtctacatgggtgagattcccctgatgactgagaatggctcttttgtc
atcaacggtactgagcgcgtgatcgtttctcagttgcaccgttccccaggcgtgttcttc
gaacacgataaaggcaagactcatagttctggtaagttgctgttctcagcacgcatcatt
ccttaccgtggttcatggctcgatttcgagtttgatccaaaagatattttgtatttccgc
gttgatcgtcgtcgtaagatgcctgtcaccattttgcttaaagccattggcttaaacaat
gagcaaattcttgcaaacttctttaattttgatcatttcaccttgagtgcaaatggtgga
tcgatggagtttgtccctgagcgcttgcgtggccagttagccaactttgatgtgcttgat
aagaatggcgtcgttgtcattcaaaaagataagcgtatcaacgcaaaacacattcgtgaa
ctcgaagccgctaaaacaaagaacatcgttgttccagatgactatttaattggccgcgtt
gtggcacgtaatattattgatccagactcaggtgaaatcttagcgtacgctaatgatgag
attactgaagagttgttggctaccttgcgtgatgcaggtatcaagcaactagaaaccatc
tataccaatgatctggattctggtgcttacatttctcagacattgcgtactgacgaaaca
gctgatcaaaccgcagcacgtattgcgatctatcgcatgatgcgtcctggcgagccacca
acagaagatgcagttgaggctttattccagcgcttgttctacagcgaagacagctatgac
ttgtcacgtgttggtcgtatgaaggtcaatagccgtttgaaccgtccagagatggaaggt
ccaatggttttatccaatgaagatattctcgacacgattaagtccctcgttgatttacgt
aacggcaaaggcgaggtagacgatattgaccacttaggtaatcgtcgtgtacgttgcgtt
ggtgagttggctgagaatcagttccgtgcaggtttatcccgcgtagagcgtgcagtaaaa
gagcgtcttggtcaagctgaaacagaaaacttgatgccgcatgatttgattaacagcaag
ccaatctcttcagcgattcgtgagttctttggttcttcacagctgtctcagtttatggat
caaaccaacccactttcagagatcacgcacaagcgtcgtatttctgcattgggacctggt
ggtttgacacgtgagcgtgcaggctttgaggtgcgcgacgtgcatccaacccactatggc
cgtgtttgtccaattgaaactccagaaggaccaaacattggtctgatcaactcactcgcg
ctttttgcccgtttgaatgagcacggtttcttggaaacgccatatcgcaaagttgctaat
agcaaggtaagcgatgaagttgtttatttatcagcaattgaagaggcgaagtatgtgatt
gctcaggcaaacgcgacgatcgacaagaatggtaagttagccgatgagttggtttcagct
cgtcaagctggcgaaaccatgatggttagcccagagcgtatcgatttcatcgacgttgct
ccaagtcagatcgtttctgctgctgcttcacttgtcccattcctcgagcacgatgatgcg
aaccgtgctttgatgggtgcgaacatgcagcgtcaagcagttccttgcttacgtcctgat
aaaccattagttggtactggtctcgagcgcattgttgcggttgactctggcactgttgtg
ctggcaaatcgcggcggtatcgttgattacgtcgatgcaaatcgtgtcgtgattcgtgta
aacgatgatgaaactgcagccggtgaagttggtgtggatatttacaacctcatcaaatat
acccgctcaaatcaaaacaccaatatcaatcagcgcccaatcgtaaaagtaggcgatcgt
gttgagcgtggcgatgtggttgctgacggcgcctctaccgatttaggtgagttggctttg
ggtcaaaatatgactgtggcatttatgccatggaatggttataacttcgaagactccatc
ttgatttctgagaaggttgttgcagatgaccgttacacctcgattcatattgaagagtta
tctgtagttgctcgtgatactaagttagggtccgaagaaattactcgcgatatctctaat
ttggctgagtcacaactctctcgtttagatgaaagcggtattgtttacattggcgctgaa
gttgaagccggcgacgtattggttggtaaggtaactccaaaaggcgaaacaactcttacc
ccagaagagaaattactacgtgcgatcttcggtgaaaaagcatccgatgttaaagatact
tctttgcgtgttccttctggaatgattggtaccgtaatcgatgttcaagtcttcacccgt
gaaggtattgagcgcgatgcccgtgcacagtcgattattcaggaagaattacaacgctac
cgcttggacttaaatgaccaattgcgtattgttgaaggtgacgccttcatgcgtttagaa
aaactcttggttggtaaagttgccaatggcggtcctcagaaattagccaaaggcagcaag
atcgataaggcttatctagcagacttggacaaataccattggtttgatattcgtccagcg
gatgaggatgttgcttctcaagttgaggcaattaaatcgtctattgaagctaagcgcaaa
caatttgatgaggcttttgaagagaagcgcaccaagttgactcaaggcgatgatctccag
cctggcgtaaccaagatggtcaaggtgtatttggctgttaagcgtcgtttacagcctggc
gataagatggccggccgtcacggtaataaaggcgtggtttcaaaaatcgctcctgccgaa
gatatgccatttatggctgacggacgtcctgtcgatatcgttttgaatccattgggcgtt
ccttctcgtatgaacgtaggtcagattttggaaacccacttaggttgggcagcccaaggt
attggtaagcgtattgacgagatggttcgtgaacacgctaagcaagctgaattgcgtaag
tttatgaagcagctctataacgaaactggtcgtcatgaagatatcgacggattcactgat
gagcaaattactgcattggcagaaaatttacgccaaggtttgccatttgctacgccagta
tttgatggtgctactgaagcagagatcgccagaatgttggagttagcttatccacaagat
gtcgctactgcattgcagatgaccccatcacgtcaacagatgattctgcgtgacggtcgt
acaggcgatcagtttgaacgccctgtaacagttggcgttatgcacgtcttgaaactccac
catttggtcgacgacaagatgcatgcccgttcaaccggaccatactctttggtgacacaa
cagccattgggcggtaaagcccagtttggtggtcagcgctttggtgagatggaagtttgg
gctctcgaggcatacggcgcttcttacgttctgcaggaaatgctgaccgtgaagtccgat
gatgtcaccggccgtaccaaagtttacgaaaacatcgtcaagggcgagcacacaattgat
gctggcatgcccgaatccttcaacgtattggtaaaagaaattcgttcgttgggtattgac
attgacatggagcgcaactga
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integrated database retrieval system
