Metapseudomonas otitidis: PtoMrB4_06550
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Entry
PtoMrB4_06550 CDS
T06890
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PtoMrB4_06550 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poj03021
]
PtoMrB4_06550 (rpoB)
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_06550 (rpoB)
Enzymes [BR:
poj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PtoMrB4_06550 (rpoB)
Transcription machinery [BR:
poj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PtoMrB4_06550 (rpoB)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PtoMrB4_06550 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BCA26678
UniProt:
A0A1I0UVU6
LinkDB
All DBs
Position
697996..702069
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKERIRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNAFYATNVFHVKGEG
LHLELVPQRLRGEVAVFDIKDPSGKVIVEQGRRITARHINQLEKAGISELEVPLDYVLGR
TTAKAIVHPATGEIIVECNTELTTDLLVKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GPGVLSREDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNQYGFLESPYRVVK
GTQVTDEIVFLSAIEEADHVIAQASATLNEQGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVQKGD
KVSRSDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGQVAEGGAGLKKGTEITDEYLDGLERGQWFKLRMA
DDALNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRKFLHEIYNEIGGRQESLDELSDQEILDLAKNLRGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNMFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaagactttagcaagttgccggac
gtcatggatgtaccctacctcctggccatccagctggattcgtaccgcgaattcctgcag
gcgggcgcgagcaaggagcggatccgtgatatcggcctgcacgcggccttcaagtctgta
ttcccgatcatcagctattccggcaacgccgctctggaatacgttggctatcgccttggc
gagccggccttcgacgtcaaggaatgcgtgctgcgcggcgtgaccttcgccgttccgctg
cgcgtcaaggtgcgtctgatcattttcgacaaggagtcgtcgaacaaggccatcaaggac
atcaaggaacaagaagtctacatgggcgaaatcccgctcatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtgatcgtctcccagctgcaccgctccccgggcgtgttc
ttcgaccatgaccgtggcaagacccacagctccggcaagctgctgtactccgcgcggatc
attccctaccgtggttcctggctggacttcgagttcgatccgaaggactgcgtattcgtt
cgtatcgaccgtcgccgcaagctgccggcctccgtcctgctgcgcgcgctcggctacagc
accgaggaagtgctcaacgccttctatgccaccaacgtcttccatgtgaagggcgaaggc
ctgcacctggaactggtgcctcagcgcctgcgcggtgaagtcgccgtattcgacatcaag
gatccgtccggcaaggtgatcgtggagcagggccgtcgtatcaccgcccgccacatcaac
cagctggagaaggctggcatcagcgagctggaagttccgctggactacgtcctcggtcgc
accaccgccaaggccatcgtgcatccggccaccggcgagatcatcgtcgagtgcaatacc
gagctgaccaccgacctgctggtcaagatcgccaaggcacaggtcgtccgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcatctccgacaccctgaagatcgactcc
accagcaaccagctggaagccctggtggaaatctatcgcatgatgcgtcctggtgagccg
ccgaccaaggaggctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgctgtcggccgcatgaagttcaaccgccggatcggtcgcaccgagatcgag
gggcctggtgtcctcagtcgcgaagatatcgtcgaggtcctcaagaccctggtcgacatc
cgcaacggcaagggcatcgtcgacgacatcgaccacctgggtaaccgtcgtgtccgttgc
gttggcgaaatggccgaaaaccagttccgtgttggcctggtgcgcgtcgagcgcgcggtc
aaggaacgcctgtccatggcggagagcgaaggcctgatgcctcaggacctgatcaacgcc
aagcccgtggctgctgcgatcaaggagttcttcggctccagccagctctcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgccgcgtttccgcactcggccca
ggtggtctgactcgcgagcgcgcgggcttcgaagtccgcgacgtacacccgacccactac
ggccgtgtgtgcccgatcgagacgcccgaaggtccgaacatcggtctgatcaactccctg
gctacctacgcccgcaccaaccagtacggtttcctcgagagcccctaccgtgttgtaaaa
ggcacccaagtgaccgatgagatcgtcttcctctccgccatcgaagaggccgaccacgtc
atcgctcaggcgtctgccacgctcaacgagcagggccaactgatcgacgaactggtggct
gtgcgtcacctgaacgagttcaccgtgaaggcgccggaagacgtcaccctcatggacgta
tcgccgaagcaggtcgtttccgtcgctgcctcgctgatcccgttcctcgagcacgacgac
gccaaccgcgcactcatgggctcgaacatgcagcgccaggctgtgccgaccctgcgtgcc
gacaagcctctggtcggtaccggcatggagcgcaacgttgcccgtgactccggtgtctgc
gtcgtggcccgtcgtggtggcgtgatcgactctgtcgatgccagccgcatcgtcgtccgt
gtgaacgacgacgaagtcgagactggcgaagccggtgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgcagaagggtgac
aaggtttcgcgcagcgacatcctggccgatggtccgtccaccgacatgggtgaactggcc
ctgggtcagaacatgcgcgtcgcgttcatgccctggaacggcttcaacttcgaagactcc
atctgcctctccgagcgcgtggtccaggaggatcgtttcaccacgatccacatccaggaa
ctgacctgcgtcgcccgtgacaccaagctaggcccagaagaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggatgaagccggcatcgtctacgtcggcgcc
gaagtacaggctggcgacatcctggtcggcaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgcgcgattttcggtgagaaggcatccgacgttaaggac
acctccctgcgtgtgccgaccggtaccaagggcaccgtcatcgacgtccaggtcttcacc
cgtgatggcgtggagcgcgactcccgtgctctgtccatcgagaagatgcagctcgacgag
atccgtaaggacctgaacgaagagttccgcatcgtcgaaggtgcaaccttcgagcgcctg
cgttccgccctggtcggccaggttgcagaaggtggcgccggcctcaagaaaggcaccgag
atcaccgacgagtacctcgacggcctcgagcgcggccagtggttcaagctgcgcatggcg
gacgacgctctgaacgagcagcttgagaaggcccaggcctacctctccgaccgccgccag
ctgctggacgacaagttcgaagacaagaagcgcaagcttcagcaaggcgacgacctggcg
ccgggcgtcctgaagatcgtcaaggtgtacctcgccatcaagcgccgcatccagccgggt
gacaagatggcgggccgccacggtaacaagggtgtggtctccgtgatcatgccggtcgaa
gacatgccccacgatgccaatggcacgccggtggacatcgtcctcaacccgctgggtgta
ccgtcgcgtatgaacgtcggccagattctcgaaacccacctgggccttgcggccaagggc
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaagatcgccgagctgcgcaag
ttcctgcacgagatctacaacgagatcggtgggcgtcaggagagcctggatgaactgagc
gatcaggaaatcctcgatctggcgaagaacctgcgcggcggcgtgccgatggctaccccg
gtgttcgacggtgccaaggagcgcgagatcaaggcgatgctgaagctcgccgatctgccc
gagagcggccagatgcgcctgttcgacggtcgtaccggcaacatgttcgagcgtccgacc
accgttggctacatgtacatgctgaagctgaaccacctggtcgacgacaagatgcacgca
cgttccaccggctcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgtttcggggagatggaggtctgggcgctggaagcctacggcgccgcctac
accctgcaggagatgctgaccgtgaagtccgacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgcatggaggccggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggcatcgacatcgaactggaaaccgaataa
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integrated database retrieval system
