Polynucleobacter sp. SHI8: PSHI8_00470
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Entry
PSHI8_00470 CDS
T10387
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
poln Polynucleobacter sp. SHI8
Pathway
poln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
poln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSHI8_00470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poln03021
]
PSHI8_00470 (rpoB)
03400 DNA repair and recombination proteins [BR:
poln03400
]
PSHI8_00470 (rpoB)
Enzymes [BR:
poln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSHI8_00470 (rpoB)
Transcription machinery [BR:
poln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSHI8_00470 (rpoB)
DNA repair and recombination proteins [BR:
poln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSHI8_00470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BDW12411
LinkDB
All DBs
Position
50774..54874
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSFTERKRIRKSFAKRLNNHQVPYLLTTQLESYTKFLQERTLQHSRLNEGLQAAFLSI
FPIVSNNGFARMEYVSYQLSPPPFDVKECQQRGLTFHSALRAKVRLIINDREAPTKVKEI
KEQEVYMGEIPLMTDTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKALGLNVEQTLANFFKFDHIEINNDGV
SVEFVPERLRGEVARFDITDRNGVVVVQKDKRINAKHIRELEAAKTQMIHSPDEYLIGRV
LAKNIIDEETGEVLANANDEVTEGILAKLREAGVKKVETIYTNDLDQGGYISQTLRVDET
ADQMAARIAIYRMMRPGEPPTEDAVEALFARLFFNEDSYDLSRVGRMKVNSRLNRAEMEG
SMVLSNEDILDSIKLLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLARVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVVD
SKVTEQVDYLSAIEEAKYVIAQANATISDKGLLADELVSAREAGETKMVMPEKINYIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPNKPLVGTGLERTVAVDSGTVV
MATRGGVVDYVDANRIVIRVNDEETAVGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGDH
IARGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGPEDITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGVERDQRAQSIIQEELHRY
RLDLNDQLRIVEGDAFSRLEKLLLNKEANGGPNKLAKGTKVSAEYLLGIDKYHWFDVRLA
DEDMSSQVDSIKESIEAKRKQFDEAFTEKQRKLTQGDELQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPVEDMPYMADGTPVDIVLNPLGVPSRMNVGQILETHLGWAALG
IGKRINAMIQAQAKVMELRTFLTSLYNETGRIEELDKLSDDEILELAKNLREGTPFATPV
FDGATEGEIAKMLELAYPPEIAGPLGMTASRQQMKLFDGQTGDAFERNVTVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVNGRTKVYENIVKGEHTIEAGMPESFNVLVKEIRSLGIDIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttatagcttcaccgaacgcaaacgcatccgtaagagctttgctaagcgcttgaac
aaccatcaggtaccctatttattaacgactcaattagagtcatatactaaatttttacaa
gaaagaacattgcaacactcaagacttaatgagggattgcaggcggcctttctatcgata
ttcccgattgtgtccaataatggatttgcaaggatggagtatgtttcataccaattatca
ccgccaccatttgacgttaaagaatgtcaacagcgtggattgactttccattcggcactt
cgtgcaaaagttcgtttaattattaacgatcgtgaagcgcctacaaaagtaaaagaaatt
aaagagcaggaagtctacatgggagaaattcctttgatgacagatactggttcttttgtc
attaatggtacagaacgtgtgattgtttctcaattacatcgttcaccaggtgtgtttttc
gagcacgacaaaggtaaaacacatagttcaggaaaattattattttccgcaagaattatt
ccttatcgtggatcatggttagattttgaatttgatccaaaagatattttgtacttccgc
gttgaccgtcgtcgtaagatgccagtaacaattttgttaaaggcattaggacttaacgta
gaacaaactctcgccaacttctttaaatttgaccatattgaaattaacaatgatggcgta
tcagtagagttcgttcctgagcgcttacgtggtgaagtggcgcgttttgatattactgat
cgtaatggcgttgttgtagttcaaaaagacaaacgtattaacgcaaagcatattcgtgaa
ttagaagctgcaaaaactcaaatgattcattcacctgatgagtatttaattggccgtgta
ttggctaaaaatatcattgatgaagaaactggcgaggttttagcaaatgccaacgatgaa
gtgacagaaggtattttggcaaagttgcgtgaagccggtgtaaagaaagtagaaacgatt
tacacaaatgacttagatcagggtggatatatttcccaaactctccgagtggacgagact
gcagatcaaatggctgcaagaattgctatttatcgcatgatgcgcccaggtgagccgcca
acagaagatgcggttgaggctttgtttgcacggttattctttaacgaagattcatatgac
ttatctcgtgtaggtcgcatgaaggtaaatagtcgtttaaatcgcgctgaaatggaaggt
tcaatggtcttgtccaatgaagacatattggattcgattaagttacttgttgatttaaga
aacggtaaaggcgaagttgatgacatcgaccacttaggtaatcgtcgcgttcgttgcgta
ggtgagttagctgaaaatcaatttagagctggtttggctcgtgtagaacgtgctgttaaa
gaacgtcttggacaagctgaaaccgaaaatctaatgccgcatgacttaattaatagcaaa
ccgatttcatctgctattcgtgagttctttggatcttcacaactttctcagtttatggat
caaactaatccattatcagaaatcacacacaagcgtcgtatttcagcgcttggacctggt
ggtttgacgcgtgaaagagctggctttgaagttcgtgacgtgcacccaacacactatggt
cgtgtctgtccgatagaaacccctgagggaccaaacattggtttgatcaattcattagcc
ttatttgcaagactgaatgaacatgggtttttagaaactccatacagaaaagttgtggat
agcaaagtaactgaacaagttgattatttgtctgcaatcgaagaagctaaatatgtaatt
gcacaggcaaatgcaactatcagtgataaaggtttattggctgatgagttggtgtctgcg
cgtgaagctggtgaaaccaaaatggttatgccagaaaaaatcaattacattgacgtggct
cctagccaaattgtttcagcggcagcatcattagtaccattcttagagcacgatgatgcg
aaccgtgcgttgatgggcgcaaacatgcaacgtcaggccgtgccttgcttaagaccaaat
aagcctttagttggaacaggccttgaaagaacggttgcggttgactctggaacggttgtt
atggcaacgcgtggtggagttgtggattatgttgacgccaatcgtattgtgattcgtgtg
aacgatgaagaaacagctgtcggcgaagtcggtgtagatatttataacttaattaaatac
acaagatcaaaccaaaataccaatattaatcaacgtccaatcgttaaggttggtgatcat
attgcacgtggcgatgtagtcgcggacggcgcttcaacggacttgggtgaattggcattg
ggtcaaaacatgactgtggcatttatgccatggaatggctataacttcgaagactcgatt
cttatttcagaaaaagttgtagcagatgatcgatacacatctattcatattgaagaatta
tctgttgttgctcgagatacaaagcttggacctgaagatattactcgcgatatttctaac
ttagctgagtcacaactcagccgtttagatgaaagtggtattgtttatattggtgcagaa
gtcgaagctggtgacgttcttgtcggtaaagttacacctaagggtgaaactcaattaact
ccagaagagaaattgttacgtgcaattttcggtgaaaaggcttctgatgttaaagacaca
tcacttcgtgttccatcaggaatgacaggaactgtgattgatgttcaagtcttcactcgt
gaaggtgttgaacgcgatcaacgtgctcagtccattattcaggaagagttgcaccgttat
cgactagacttaaacgatcaattgcgtattgttgaaggtgatgcatttagccgtttagag
aagctactcttaaacaaagaagcaaacggtggtccaaacaagctcgcaaaaggcactaaa
gtgtctgcagagtatttgctaggtattgacaaatatcattggttcgatgttcgtttggcc
gatgaagacatgtcttcacaggttgattcaattaaagagtctattgaagcaaaacgtaag
cagtttgatgaggcctttacagagaaacagcgtaagttaacgcagggtgatgaattacag
ccaggcgtaacaaagatggttaaagtatatttagccgttaagcgtcgcctgcaacctggt
gacaagatggctggacgtcacggaaacaaaggggttgtttcaaaaatagcaccagtggaa
gatatgccatacatggcagacggaacgccggttgatattgtattgaacccacttggtgtt
ccatcacggatgaacgtcggtcaaattttagaaacccacttaggttgggctgctttgggc
ataggtaagcgtattaatgccatgattcaagctcaggcaaaagtgatggagttacgcact
ttcttgacaagcctctataacgagactggtcgcattgaagagttagataaattatctgac
gatgaaattttagagttggccaagaatttacgtgaaggtacgccatttgcaacgccagtt
tttgatggcgcgacagaaggtgaaattgccaaaatgctagagcttgcctatcctccagaa
attgctggaccattaggtatgactgcttcaagacaacaaatgaagttgtttgatggtcaa
actggcgatgcatttgaaagaaatgtaaccgttggagtgatgcacgttctcaaacttcac
catttggttgatgacaagatgcatgctcgatctactggaccttactcacttgttacacaa
caaccactcggcggtaaagcgcaatttggtggtcaaagatttggtgagatggaagtttgg
gcattggaagcttatggcgcatcttatgttcttcaagagatgctcacagttaagtcagat
gatgtgaacggacgtacaaaagtctacgagaacattgtcaaaggtgagcacacgattgaa
gctggaatgcctgagtcctttaatgttctggtaaaagaaatcagatcattaggaattgat
atcgatatggagcgtaattaa
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