Pongo abelii (Sumatran orangutan): 100461602
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Entry
100461602 CDS
T01416
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon04151
PI3K-Akt signaling pathway
pon04510
Focal adhesion
pon04512
ECM-receptor interaction
pon04518
Integrin signaling
pon04820
Cytoskeleton in muscle cells
pon04974
Protein digestion and absorption
pon05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100461602 (COL6A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100461602 (COL6A2)
04518 Integrin signaling
100461602 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100461602 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100461602 (COL6A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100461602 (COL6A2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100461602 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pon04147
]
100461602 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
pon00536
]
100461602 (COL6A2)
Exosome [BR:
pon04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100461602 (COL6A2)
Glycosaminoglycan binding proteins [BR:
pon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100461602 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
100461602 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Ins134_P3_kin_N
Motif
Other DBs
NCBI-GeneID:
100461602
NCBI-ProteinID:
XP_024095114
Ensembl:
ENSPPYG00000011527
LinkDB
All DBs
Position
22:56512441..56548169
Genome browser
AA seq
1019 aa
AA seq
DB search
MLQGPCSVLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQ
SPTDILLFHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIK
NLQGISSFRRGTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERA
REEGIRLFAVAPNQNLKEQGLRDIASTPHELYRNDYATMLPDSTEIDQDTINRIIKVMKH
EAYGECYKVSCLEIPGPPGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPK
GVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEA
GSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNNGAPGSPGVKGAKGGPGPRGPK
GEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGAL
GEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGQKGEPGPRGPEGGRG
DFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECDVMTYVRE
TCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPKSETGTRV
GVVQYSHEGTFEAIQLDDERIDSLSSFKEAVKNLEWIAGGTWTPSALKFAYDRLIKESRR
QKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHEKHESENLYSIACDKP
QQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPDLPCQTELSVAQCTQRPVDVVFLLDG
SERLGEQNFHKARRFVEQVARRLTLARRDDDPLNARVALLQFGGPGEQQVAFPLSHNLTA
IHEALEAAQYLNSFSHVGAGVVHAINAIVRSPRGGARRHAELSFVFLTDGVTGNDSLHES
AHSMRKQNVVPTVVALGSDVDMDVLTTLSLGDRAAVFREKDYDSLAQPGFFDRFIRWIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgctccagggcccctgctccgtgctcctgctctggggaatcctgggggccatccaggcc
cagcagcaggaggtcatctcgccggacactaccgagagaaacaacaactgcccagagaag
accgactgccccatccatgtgtacttcgtgctggacacctcggagagcgtcaccatgcag
tcccccacggacatcctgctgttccacatgaagcagttcgtgccgcagttcatcagccag
ctgcagaacgagttctacctggaccaggtggcactgagctggcgctacggcggcctgcac
ttctccgaccaggtggaggtgttcagcccaccgggcagcgaccgcgcctccttcatcaag
aacctgcagggcatcagctccttccgccgtggcaccttcaccgactgcgcgctggccaac
atgacagagcagatccggcaggaccgcagcaagggcaccgtccacttcgccgtggtcatc
accgacggccacgtcaccggcagcccctgcggtggcatcaagctgcaggccgagcgggcc
cgcgaggagggcatccggctcttcgccgtggcccccaaccagaacctgaaggagcagggc
ctgcgggacatcgccagcacgccgcacgagctctaccgcaacgactacgccaccatgctg
cccgactccaccgagatcgaccaggacaccatcaaccgcatcatcaaggtcatgaaacac
gaagcctacggagagtgctacaaggtgagctgcctggaaatccctgggccccctggcccc
aagggctaccgtggacagaagggtgccaagggcaacatgggtgagccgggagagcctggc
cagaagggaagacagggagacccgggcatcgaaggccccattggattcccaggacccaag
ggcgttcctggcttcaaaggagagaagggtgaatttggagccgacggtcgcaagggggcc
cctggcctggctggcaagaacgggaccgatggacagaagggcaagctggggcgcatcgga
cctcctggctgcaagggagaccctggaaaccggggccccgacggttacccgggggaagca
gggagtccgggggagagaggagaccaaggcggcaagggggaccctggccgcccaggacgc
agagggcccccgggagaaatcggggccaagggaagcaaggggtatcaaggcaacaacgga
gccccaggaagtcctggcgtgaaaggagccaagggcgggcccgggccccgcggacccaaa
ggcgagccggggcgcaggggagaccccggcaccaagggcagcccaggcagcgacggcccc
aagggggagaagggggatcctggccctgaggggccccgcggcctggctggagaggttggc
aacaaaggagccaagggagaccgaggtttgcctggacccagaggcccccagggagctctt
ggggagcccggaaagcagggatctcggggagaccccggtgatgcaggaccccgtggagac
tcaggacagccaggccccaagggagaccccggcaggcctggattcagctacccaggaccc
cgaggagcacccggacaaaaaggcgagcccggcccacgcggccccgagggaggccgaggc
gactttggcttgaaaggagaacctgggaggaaaggagagaaaggagagcctgcggatcct
ggtccccctggtgagccaggccctcgggggccaagaggagtcccaggacccgagggtgag
cccggcccccctggagaccccggcctcacagagtgtgacgtcatgacctacgtgagggag
acctgcgggtgctgcgactgcgagaagcgctgtggcgccctggacgtggtcttcgtcatc
gacagctccgagagcattgggtacaccaacttcacgctggagaagaacttcgtcatcaac
gtggtcaacaggctgggcgccattgctaaggaccccaagtccgagacagggacgcgcgtg
ggcgtggtacagtacagccacgagggcaccttcgaggccatccagctggacgacgaacgt
atcgactccctgtcgagcttcaaggaggctgtcaagaacctcgagtggattgcgggcggc
acctggacaccctcggccctcaaatttgcttacgaccgcctcatcaaggagagccggcgc
cagaagacacgcgtgtttgcggtggtcatcacggacgggcgccacgaccctcgggacgat
gacctcaacctgcgggcgctgtgcgaccgcgacgtcacagtgacagccatcggcatcggg
gacatgttccacgagaagcacgagagcgagaacctctactccatcgcctgcgacaagccg
cagcaggtgcgcaacatgacgctgttctccgacctggtcgccgagaagttcatcgatgat
atggaggacgtcctctgcccggaccctcagatcgtgtgcccagaccttccctgccaaaca
gagctgtccgtggcacagtgcacgcagcggcccgtggacgtcgtcttcctgctggacggc
tctgagcggctgggtgagcagaacttccacaaggcccggcgcttcgtggagcaggtggcg
cggcggctgacactggcccggagagacgacgaccctctcaacgcgcgcgtggcgctgctg
cagtttggcggccccggcgagcagcaggtggccttcccgctgagccacaacctcacggcc
atccacgaggctctggaggctgcgcaatacctgaactccttctcgcacgtgggcgcgggc
gtggtgcacgccatcaacgccatcgtgcgcagcccgcgtggcggggcccggaggcacgca
gagctgtctttcgtgttcctcacggacggcgtcacgggcaacgacagcctgcacgagtcg
gcgcactccatgcgcaagcagaacgtggtgcccaccgtggtggccttaggcagcgacgtg
gacatggacgtgctcaccacgctcagcctgggtgaccgcgccgccgtgttccgcgagaag
gactatgacagcctggcacaacccggcttcttcgaccgcttcatccgctggatctgctag
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