Populus trichocarpa (black cottonwood): 18099392
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Entry
18099392 CDS
T01077
Name
(RefSeq) valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
18099392
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pop01007
]
18099392
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
18099392
Enzymes [BR:
pop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
18099392
Amino acid related enzymes [BR:
pop01007
]
Aminoacyl-tRNA synthetase
Class I (U)
18099392
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
18099392
Prokaryotic type
18099392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
Val_tRNA-synt_C
tRNA-synt_1_2
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
18099392
NCBI-ProteinID:
XP_006383336
UniProt:
U5GC79
LinkDB
All DBs
Position
17:complement(12872689..12886207)
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AA seq
972 aa
AA seq
DB search
MILQMTLSSPFLLSSCSSAHRLNPLLFSKRRHCPIKFSHFPFHLLTKPRFLSVAAAATEN
GVFTSPENAKSFDFSSEERIYNWWESQGFFKPTFDRGSDPFVVSMPPPNVTGSLHMGHAM
FVTLEDIMVRYNRMKGRPTLWLPGTDHAGIATQLVVEKMLASEGIKRTDLSRDEFTKRVW
EWKEKYGGTITNQIKRLGASCDWTRERFTLDEQLSQSVIEAFIKLHEKGLIYQGSYLVNW
SPNLQTAVSDLEVEYSEEPGTLYHIKYRVAGQSDFLTVATTRPETLFGDVAIAVNPKDDR
YSKFIGKMAIVPMTYGRHVPIIADRHVDKDFGTGVLKISPGHDHNDYYLARKLGLPILNV
MNKDGTLNEVAGLYCGLDRFEARKKLWSELEETGLAIKKEPHTLRVPRSQRGGEIIEPLV
SKQWFVTMEPLAEKALRAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW
YIVGKNCEEDYIVARNADEALEKAREKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV
SAEDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSK
TLGNVIDPLDTIKEFGTDALRFTISLGTAGQDLNLSTERLTANKAFTNKLWNAGKFVLQN
MPSQTDVSAWEAIRNCKFDKEESVLRLPLPECWVVSELHVLIDMVTASYDKFFFGDVGRE
IYDFFWSDFADWYIEASKARLYQSGANSACSEAQAVLLYVFKNVLKLLHPFMPFVTEELW
QALPDPKEALIVSPWPQTSLPRFPNSIKKFENFQALTRAIRNARAEYSVEPAKRISASIV
ASEEVIQYISNEKEVLALLSRLDLQNIHFTDSPPGDANQSVHLVASEGLEAYLPLADMVN
ISAEVERLSKRLSKMQVEYDGLAARLSSRKFVEKAPEDVVRGVREKAAEAEEKIKLTKNR
LAFLKSSSLVSQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgatacttcaaatgacactctcttctccatttctcctctcttcctgttcctctgctcac
agactcaaccctcttctcttctctaaacgacgccattgtcccatcaagttctctcacttc
cctttccatctactcaccaaacccagattcctttcagttgctgctgctgcaacagaaaat
ggtgtatttacttctccagaaaatgcaaagtcgtttgatttttcttcagaagaacgaata
tacaattggtgggaatctcaaggattttttaagccaacttttgaccgggggagtgatcct
tttgtggtatcaatgccacctccaaatgttactggttcgttgcacatggggcatgcaatg
tttgtgactcttgaggatatcatggttagatacaatcgtatgaagggaagaccaacactg
tggcttcctggtactgatcatgccggtattgcaactcagttggttgttgaaaaaatgctt
gcatctgaaggaatcaaaaggactgatctgagcagagatgagttcacaaaacgagtttgg
gagtggaaagagaaatatggtggaactattacaaatcagattaagagactcggtgcttcc
tgtgattggactagagagcgtttcacccttgatgagcagctaagtcaatctgtgattgag
gcttttatcaagcttcatgagaaaggcctaatctatcaaggctcgtatttggttaactgg
tctcctaatctacagactgctgtttcagacttggaagtagaatattctgaggaacctggc
actttatatcacatcaagtatcgagttgctggacagagtgacttcttgacagttgcaaca
acacggcctgagactttatttggtgatgtagctattgctgtgaatcccaaggatgaccgc
tattctaagtttattgggaagatggcaattgtacccatgacatatggccgccatgtacct
atcatcgctgacaggcatgttgataaagactttgggactggtgtgttgaagataagcccg
ggacatgatcataatgattactatcttgctagaaagcttggtctccctattcttaacgtg
atgaataaggatgggacccttaatgaggttgctggattgtactgtggtctcgatcgattt
gaggcacggaaaaaactgtggtcagaacttgaggagaccgggttagctatcaaaaaggag
ccgcacactttaagggttcctagatcccaacgtggaggagaaataattgagccattggta
agtaaacagtggtttgttaccatggagcccttggctgagaaggctcttcgtgctgttgaa
aaaggagagttaaccataatgcctgaaagatttgagaagatttataatcattggctgtca
aacatcaaggattggtgtataagcagacaactgtggtgggggcaccgcatacctgtgtgg
tacattgtaggaaaaaactgtgaagaagattacatagttgcaaggaatgctgatgaagct
cttgagaaagctcgtgagaagtatgggaaaaatgttgaaatttatcaagatccagatgtt
ctggatacttggttttcaagtgctctatggccattcagtactcttggttggccagatgtt
tcagcagaggattttaagaagttttatcctacaacaatgcttgaaactgggcatgacatt
ttgttcttttgggtggcaaggatggtcatgatgggaattgagtttactgggactgttcca
ttctcatatgtttatcttcatgggcttatccgggactcgcagggacggaaaatgtccaaa
acacttggtaacgtaatagatccccttgatacaatcaaagagtttggcactgatgctctg
cgattcactatttctctaggaactgctggccaggaccttaatttgtctactgagaggttg
actgccaacaaggccttcaccaacaaactgtggaatgcgggcaagtttgtgctacagaac
atgcctagtcaaactgatgtatctgcttgggaagctattaggaattgtaagtttgacaaa
gaggagtctgttctcaggctacctttaccagaatgttgggtggtgtcagaacttcatgtt
cttattgacatggtcacagcgagctatgataagtttttctttggagatgttgggagggaa
atatatgatttcttctggagtgattttgctgattggtatatcgaagccagtaaagctcgc
ctttaccagtctggagccaattcagcttgttcagaggcacaggcagttctattgtatgtt
ttcaaaaatgtattgaaattgctacatccattcatgccatttgtcactgaagaactatgg
caggcactccccgacccgaaagaagcacttatagtatctccttggccccagacttcactt
ccacggtttcccaactccataaaaaaatttgaaaatttccaagctttgactagagcaatc
cgcaatgctcgagcagaatactcagttgagccagccaagcgtatatctgcatctatagtt
gcaagtgaagaagtcatccaatacatatctaacgagaaggaagtcttagctcttctttcc
aggctagatctacaaaatatccatttcacagattctcctccaggggatgcaaaccagtcg
gtacatctggttgctagcgagggactggaagcttaccttcctcttgcagatatggtcaat
atatctgctgaagtcgaacgcctttcaaagcgcctctccaagatgcaagtggagtatgac
ggacttgctgctcgtctcagttcccggaaatttgtagagaaagctcctgaggatgttgtc
cgtggggttcgagaaaaggcagcagaagcagaggagaagataaaactcaccaagaaccgg
ttagctttcctaaaatcctctagtctggtgtcacaatag
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