Populus trichocarpa (black cottonwood): 18102818
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Entry
18102818 CDS
T01077
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18102818
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
18102818
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
18102818
NCBI-ProteinID:
XP_024467235
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Position
11:complement(605365..607198)
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AA seq
392 aa
AA seq
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MASPAPLILLAFLVPYLCLTLPAYALDYKHYKPLSSYLPSNIKKTLNTIDSCWRAQSNWA
NNRRALADCAVGFGRGAMGGKYGAIYVVTTPNDDPVNPKPGMLRYGAIQSKPLWIVFAKD
MVITLRNELIMNSYKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGRVIS
TPTHVGKRGGSDGDAIAIFASSNVWIDHCYLARCTDGLIDVIHASTSITISNNYFSQHDK
VMLLGHNDGYTADKVMKVTIAFNRFGSGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSA
NPTIFSEGNYFLARNGNSKQVTKREAKNGWTNWKWRSSKDVFMNGAYFVQSGYGSCAPLY
SKTQSFTVAPGSLVPALTSGAGPLNCFRGQPC
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaccagcccctctaatattgcttgcatttcttgtaccatacttatgtttaacc
ctaccagcttatgcactagattacaagcattataaacccttatcaagctatcttccaagc
aatattaagaaaactcttaacactatagactcatgctggcgtgcccaatcaaattgggcc
aacaatcgtcgtgccttggccgattgcgccgtagggtttggcagaggcgcgatgggaggg
aaatatggggcgatatacgtcgttactacaccgaatgatgatcctgtcaaccctaaaccg
ggcatgcttcggtatggtgctatccaaagtaaacctctttggatcgtttttgccaaggat
atggtaatcacacttagaaatgagcttataatgaatagttataagactatagatgggagg
ggagctaaagtagagattgcatatggaccgtgcataacaattcaaggtgttagccatgtt
attattcatgggattagtattcatgattgcaaaccagggaaatctggtagagttattagc
actcctacgcacgttgggaagcgtggaggctccgatggagatgccattgccatctttgca
tcttcaaacgtttggattgaccattgctatcttgctcgttgcaccgatggcctaattgat
gtaattcatgcttcaacctccatcacaatctctaacaattacttctcccagcatgacaag
gtgatgttgcttggacacaatgatggatatacagcagataaagttatgaaagtaactata
gctttcaaccgttttggctctggacttattgagaggatgccaagggtaaggtttggctat
gctcatgttgctaacaatagatatgatgagtggcaaatgtacgcgattggtggcagtgct
aatccaaccatctttagtgaaggaaactactttttagctcgtaatggtaattccaagcag
gttactaagagagaggccaagaatggctggacgaattggaaatggagatcatctaaggat
gtatttatgaatggtgcttattttgtacaatctggatatggaagttgtgcgccactttat
tctaaaacccagtcctttacggtggctcctgggtccttggttcctgctttaacatctggt
gcaggtcctctaaactgttttaggggtcaaccatgttga
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