KEGG   Populus trichocarpa (black cottonwood): 18104189
Entry
18104189          CDS       T01077                                 
Name
(RefSeq) THO complex subunit 7A
  KO
K13176  THO complex subunit 7
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    18104189
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18104189
   03041 Spliceosome [BR:pop03041]
    18104189
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     18104189
Spliceosome [BR:pop03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    18104189
SSDB
Motif
Pfam: THOC7 APG6_N
Other DBs
NCBI-GeneID: 18104189
NCBI-ProteinID: XP_052302471
LinkDB
Position
13:7030314..7046974
AA seq 269 aa
MTEAFKPGSPYSDVTHSPVESPTGIPTEGTLKGRKISGRGETVAANYAFGPLEDDVIIKH
RLLTRTTTTRGEPPLKKLQKKFASYVSEIEKDEDNYNDCVKLSKAFLQELSTFEIPLLKS
KAVIDSNVREKENFNELKDDINRQILQAQADIEDLKKQLEESKIERQHKEECEAIRKLIA
TQPPRSLMQKVITDLEKEIAALEAENTASSRLLELRKKQFVLLLQQVDELQNTIEEDEKN
LIEEMRVATEEQKNGMEDAGGVSEAMAVD
NT seq 810 nt   +upstreamnt  +downstreamnt
atgactgaggcattcaaacctggatctccgtacagtgacgtgacacattcaccggtggaa
tcaccgacgggtataccgacagaaggtacgttgaaaggaagaaagatttctggaagaggg
gaaacagtagcggcgaactacgcattcggaccgctcgaagatgatgtaattataaaacat
aggctactcacccgcaccaccactacaaggggtgaacccccgctgaagaaacttcagaag
aagtttgcttcgtatgtttccgagatcgagaaggatgaggataattacaatgactgtgtc
aaactttctaaagcttttttacaggaattgtctactttcgagattccattactcaagagc
aaagctgttattgattctaatgtaagagagaaggagaattttaatgagttgaaggatgac
ataaataggcagattttgcaggcacaggctgatattgaagatttaaagaagcagcttgag
gagagcaaaattgaaaggcagcataaggaggaatgtgaggcgataaggaaattgatcgcc
acgcagcctccaaggtcacttatgcagaaggtgataacggatttggagaaagaaattgct
gctttggaggcagaaaatacagccagttctaggttactggaacttcgaaagaaacaattc
gttctcttgttgcaacaggtggatgagttacagaacactatagaggaagatgagaagaat
ttgattgaggagatgagagtggcaacagaagagcagaagaacggaatggaggatgctggt
ggggtctcggaagccatggctgttgattag

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