Populus trichocarpa (black cottonwood): 18105680
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Entry
18105680 CDS
T01077
Name
(RefSeq) transcription factor SPEECHLESS
KO
K20558
transcription factor SPEECHLESS
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
18105680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18105680
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
18105680
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Motif
Other DBs
NCBI-GeneID:
18105680
NCBI-ProteinID:
XP_024441661
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Position
15:complement(1640384..1643028)
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AA seq
345 aa
AA seq
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MSECLSDFLEEVQPEFGDTTFDGDDLFAIFESLDSVTDFPPVIPLDEVVACSKESEETRR
LVSQKSSSSSALQDFDETNNELETSPKSKRQKIAASAAAIASSDQEVNPDGQQRISHITV
ERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYS
EVLSPRIVSSPRPPLSPRKPPLSPRLNLPNSPRTPQPCSPYKPRLQQGYISPTMATSLEP
SPTSSSSSSINDNINELIANSKSAIADVEVKFSGPNVLLKTVSPRIPGQAVKIVSALEGL
ALEILHVSISTVDHETMLNSFTIKIGIECQLSAEDLAQQIQQTFC
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagtgtttgtctgattttctcgaagaagtacaacctgaatttggcgacactacc
tttgatggagatgatctgtttgctatttttgagagcttagacagtgtaacagattttccg
ccagtgattccattagatgaagttgttgcttgctcaaaagaaagcgaagaaacgaggcgg
ttagtctcacaaaagtcttcatcttctagtgctttgcaagattttgatgagaccaataat
gagcttgaaacttcaccaaaaagtaagagacaaaagattgcagcttcagcagcagccata
gcttcttcagatcaggaagtgaacccagatgggcagcaacgtatatctcatattacagtg
gaacggaaccggcgaaagcaaatgaatgaacacttgtccgtgttaaggtccctcatgcct
tgcttctatgtcaaaagaggagaccaagcatcaataattggaggagttgttgattacatc
aatgagttgcaacaagttctacaatctcttgaagccaagaagcaaaggaaagtttatagt
gaagttcttagccctaggatcgtttcaagtccaagacctccacttagccctagaaaacca
ccactaagtcctagacttaatttgcccaatagcccaagaacgccacaaccatgtagccct
tacaagccaagattgcaacaaggttacatttctcctaccatggccacctcactcgaacca
tctccaacttcttcttcttcctcgtccattaatgacaacattaacgaactcatcgcgaat
tctaagtcagcaattgctgatgttgaggttaagttctctggtccaaatgttctattgaag
actgtatctcctcggattcctggtcaagctgtgaaaatagtctctgcccttgaaggcctt
gccctcgagattctacatgtgagcattagcacagtagatcatgaaactatgcttaattcc
ttcacaatcaagattggaattgaatgccagcttagtgccgaggatcttgctcaacaaatc
cagcaaacattctgctag
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