Populus trichocarpa (black cottonwood): 7458593
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Entry
7458593 CDS
T01077
Name
(RefSeq) elongator complex protein 1 isoform X1
KO
K11373
elongator complex protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7458593
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
7458593
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
Beta-prop_ELP1_2nd
A-sol_ELP1
TPR_ELP1
HB_ELP1
Beta-prop_WDR19_1st
TPR_GEMI5
tRNA_Me_trans_M
TPR_IFT80_172
Motif
Other DBs
NCBI-GeneID:
7458593
NCBI-ProteinID:
XP_024467021
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Position
10:19820134..19825907
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AA seq
1324 aa
AA seq
DB search
MKNLKLYGEISQNLELQSPQEVILFSAFDIERNRLFFASSANIIYTAHLSSFQNGKSKGL
LLPSEINQIELEDGDLITAFDYLMEKEALIIGTENGLLLLHNIDDNSTEIVGQVEGGVKC
ISPSPDGDLLAILTGFRQVLVMTHDWDLLYEIAVEEKENYGDGLDVRELDGKNMFGSFIS
WRGDGKYFATISEASESSALLKKIKVWERDSGALHSTSDSKVFMGAVLEWMPSGAKIAAV
YDRKVENRCPDIAFYERNGLVRSSFSIKEAVDATVESLKWNCGSDLVASVVRCEKYDAVK
LWFLSNNHWYLKHEVRYSRQDGVRLMWDPVKPLQLICWTFGGQITIYNFTWISAVTENST
ALVIDDSKILVTPLSLSLMPPPLHLFSLKFPSAVRDLALYSNNSKNRVAAFLSDGSLGVV
ELPDPDTWEDLEEKEFTVEASISETGFGSFVNLAWLDSHILLAVSHYGFSHSNCASHSSM
GEDGLSGFCLQEIELLCSEDHVPSLVTGSGWHAKISHRNYLEGLVIGIAPNPAKKRSAFV
QFDGGNVVEYTSMLGLAVTGGSTKHDDMSFSSSCPWMSVAKASDSGSLKPLLFGLDDIGR
LHFGGKVLCNNCSSFSCYSNLADQVVTHLILSTKQDFLFVVEIGDILHGEIELKYENFVH
TGNRRKEENMNFINIWERGAKIIGVLHGDDAAVIIQTTRGNLESIHPRKLVLASIVNALI
QRRFRDALLLVRRHRIDFNVIVDYCGWQTFLQSASEFVKQVNNLSYITEFICSIKNENIM
ETLYKNYISTPCQNRAGDVQAKDVMSFDSSSKVSSLLLAIRKALEEQVTESPARELCILT
TLARSDPPMLEEALKRIKVIREMELLGSSDPRRNSYPSAEEALKHLLWLSDSDAVFEAAL
GLYDLNLAAIVAVNSQRDPKEFLPYLQELERMPSLVMCYNIDLRLHRYEKALRHIVSAGD
AYYSDCMNLMNKNPQLFPLGLQMITDPAKKMQVLEAWGDHLSDEKCFEDAAITYLCCSSL
ENALKAYRACGDWSGVLTVAGLLKLEKDELMQLAHDLCEELQALGKPGEAAKIALEYCGD
VNSGINLLISARDWEEALRVAFMHRQEDLVLEVKNAALDCASTLISEHKEGLEKVGKYLT
RYLAVRQRRLLLAAKLQSEERSINDLDDDTVSEASSNFSGMSAYTTGTRKGSAASVTSSV
TSKARDMRRQRKRGKIRPGSPDEELALVEHLKGMSLTAGAKNELRSLLFTLVKLGGEEIA
RKLQLAGENFQLTQMAAVKLAEDTISTDIINEKAHTLEHYIRKMRSELPNLDYFSWRSKV
FISP
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacctgaagctatacggggagatttctcagaatctggaattacaatcgccacaa
gaagttatcctcttctccgctttcgatatcgaacgcaaccgcctcttcttcgcttcttcg
gccaatatcatttacacagctcacctttcttctttccagaatggaaaatcaaaaggcttg
ctattaccgtcggagattaatcaaattgaattggaagacggagacttaatcactgcattt
gattacctgatggagaaagaagccttaattattggaactgaaaatggacttttattattg
cataatattgatgataattctactgaaatcgtcggtcaagttgaaggcggggttaagtgt
atctcgccgagtcccgatggagatttgcttgctattcttactggtttcagacaagtgtta
gttatgactcatgattgggatttgttgtatgaaatcgcggttgaggagaaggaaaattac
ggtgatggtcttgacgtacgtgaattggatggaaagaatatgtttgggagttttatttca
tggcgaggtgatgggaaatattttgctacgataagtgaagcgagtgaatcttctgccttg
cttaagaagattaaggtttgggaacgggattcgggtgcattgcattccacgtcagattct
aaggtatttatgggggcggttttggaatggatgccaagtggagcgaaaattgctgctgtg
tatgatagaaaagtggagaataggtgtcctgatattgctttctatgagaggaatgggttg
gtgaggagttcttttagtattaaagaagcagttgatgcaacagttgaaagtcttaagtgg
aattgtggttcggatcttgttgcatctgttgttagatgtgagaaatatgatgctgttaag
ctctggtttttgagcaacaaccattggtatttgaaacatgaagttagatactcgagacag
gatggagttaggctcatgtgggatccagtaaagccactacagttgatttgttggactttt
ggaggccagatcacaatttacaacttcacctggatttctgctgtgacagagaactcgaca
gcattggtcattgatgactccaaaatacttgtaactccactttctttatccctgatgcca
cctccccttcatttattcagcctcaaatttccaagtgcagtgagggacctggctttatat
tccaataattctaagaatagagtagctgcatttttatcagatggctctttgggtgttgta
gaacttcctgacccagatacatgggaggatcttgaagaaaaagaatttactgttgaagct
tctatttctgagacaggttttggatcctttgtgaaccttgcatggctggattcacacata
ttacttgctgtttctcattatggcttctctcatagtaattgtgcatcccacagttcaatg
ggcgaggatggacttagtggtttttgtttgcaggaaattgaacttttgtgttccgaggat
catgtaccaagtttggtaacaggatcaggctggcatgcaaagatttcccatagaaattat
ttggaagggcttgtgattggcattgctcctaatcctgccaagaaacgttcagcttttgtt
cagtttgacggtggaaatgttgttgagtacacttcaatgttgggcttggctgttactgga
ggttcaacaaaacatgatgatatgagcttttcatcatcttgcccttggatgagtgtggct
aaggccagtgacagtgggtcattaaagcccttgctttttggtcttgatgacattgggagg
ctgcattttggtgggaaagtactatgcaacaactgcagtagtttctcatgctactcaaat
ttggctgaccaagtagtcactcatttgatactttcaaccaaacaagactttctctttgtt
gtggaaatcggtgatatactgcatggagaaatagagttaaaatacgagaactttgtccac
accggtaacagaagaaaagaagaaaatatgaacttcataaatatttgggaaagaggtgcc
aaaattattggtgtcctgcatggtgatgatgctgctgttattatacagacaactcgggga
aatctggaaagcattcaccctagaaagctggttcttgcttcaattgtcaatgctttgatc
caaaggcgttttagggatgcactgctgttggtcagaaggcatagaatagatttcaatgtt
atcgttgactattgtggatggcaaacttttcttcagtcagcttcagaatttgtcaaacag
gttaacaatttgagctatataaccgagttcatttgttccataaagaatgaaaacattatg
gaaaccctatacaaaaattatatctctacaccctgccaaaacagagctggagatgttcaa
gctaaggatgtcatgagctttgatagttccagcaaggtttcttctctcctcctggcaata
aggaaggctcttgaggaacaagtcaccgaaagccctgcaagggagctttgcattctaacc
actctagctcgcagtgatcctcctatgctcgaagaagctttgaaaagaatcaaagttatt
cgtgaaatggaattattaggttcaagtgaccctaggagaaactcttatccatctgctgaa
gaagctctgaagcatctgttgtggttatctgattccgatgctgtatttgaagctgcctta
ggactttatgatttgaaccttgcagctattgtggcagtgaactctcaaagagacccaaag
gaatttcttccttatctacaagaattagaacgcatgccaagcctcgtaatgtgctacaat
attgaccttcggttacaccggtacgagaaggctctcagacacattgtttccgctggtgat
gcatattattcagattgtatgaacctcatgaacaaaaatcctcaattatttcctcttggc
cttcaaatgatcactgatcctgcaaagaaaatgcaggtccttgaggcctggggcgatcat
cttagtgatgaaaaatgctttgaggatgccgcgataacttatctgtgttgttccagtttg
gaaaatgccttgaaggcatatcgcgcttgtggtgattggagtggggtgcttactgttgct
gggctccttaaactggaaaaggacgagttaatgcaacttgctcatgatctttgtgaagag
ctccaagcacttggtaaaccaggagaagctgccaaaattgctctggagtattgtggagat
gttaacagtgggattaatttattaattagtgcaagggactgggaggaggctttgagggtt
gctttcatgcataggcaagaggatctggtattggaagtgaagaatgcagctttagattgt
gcaagcacactaatcagtgaacacaaggaaggcttggagaaggtagggaagtacttgact
cgctatttagctgttcgacagagaagattacttctggcagcaaagcttcagtcagaggaa
cggtcaataaatgatctggatgatgatactgtttcagaagctagcagtaacttcagtggc
atgagtgcctacaccacaggaacaaggaagggctctgctgcttctgtaacctccagtgtc
actagcaaggcaagagacatgaggcgtcagcggaagagaggaaaaattcgccctggcagc
cctgatgaggagttagcactggtagagcatttgaaaggcatgtctctaacagctggagca
aagaatgagcttagatctttattgtttacccttgtgaagcttggtggtgaagaaatagca
agaaagctacaattggctggagagaattttcaacttactcagatggcagcagtcaaacta
gcagaagatacaatttctactgatatcataaatgagaaggcacacactttggagcattac
attcggaaaatgagaagtgaactgccaaatttggattatttttcttggcgatctaaagtt
ttcatttctccttga
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